Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0886 ATGGGTTCTTTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGAGGAGCTAAATACAAGGAAAGCTCCTGGGATTTATCAGTCCAGTTCTCAGTGTAGCACGTCTGAGAAAAATCAGAAACTTTCGGTGCTGAAACTGGGATACAAGGATGATCTAGATGATGATATTAATAAGCTGTTTGAATCGATTGCTCTTAAATCTTCATCAAGGGATTTGGGCCTTTTACAATATGGTACAAGTCCTAAGCTGAAAAGTGCATTAAAAAAGCCAATTACAATGGGTGTTCCTCGGTCCCCAAGAGTTGGGACTTCTGAGCCTGTTAATTTGAAGCAAGCATTAAGAGACCTTTGTATATCGAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAATCAACTGCTTCTCCAAGAATATCTGAAGCTGGGAAGATACAGACGTTGTACAATTCAGTTGTAGCTGAAACCAGTCGATCTGGGCCTTCCTTTGTTGAGAGCAAGGGGCATCAAATTGAAATATCTCTAATGCCAGAAAAAAGCAAGTCCCTTTCCTTGGAGAAAACCTCTCAATCTTATCAAACTGCCGAAATTGCATCCTCGAGCCAAAACATTCATTTGTCTCGGGAAATTGCTGTTGCAACTACTCAATATGGTTCTGGTACTTCATTGATACAAAGTGATTTGGCATGCTCATCAAGTGAAGTTGGGATTCAATCACAACGAGTGGTACCTGTTGAAACAGAAGAACAAGCATCTGCCTCTTCTCCCTCTCTTTATAATACGTTTGGAAGCCAATCAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTAGGAAATAAAGTGTCCATGTCAAATCCTGGGAGGAAAGGTAGGTTGCAAACAGTATCTTCTTCATCTACTTCTGTAAATGGCAACAGAGTTAACAAACTGCCACGCCATGCCCCCCGCACAGTTAAATCAGTCATCAAGAACAAGAATCTGAGTAAGCAGAAACTAAAGGAGGATTCATGTTCTGCTTCATGCGGTCCTACTGCTACACCCAATGAAGTTAATAAGCCAGTTCCTGGTACACCTCGGCTAATTTGTGAGAGATGTAGGTGTGCTTTAGGAAATACAAGTGAAGAAAAAAACCAAGATATTGTGGCATTGGACTGTACCAGTCCTGGAAATGGAGTGAACTTGAGTAATGTGCACTCTGTTTCAAAGAAACCTGGTTTGCTGTCAACTAGCGGTATTAAAAGCAAAACAGTTGCAAAAGTGAAGAACACCAAGTTGAAAGAGCAACTCGAATTTTCACAAAGTTCAAAGAGTAGTCACGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGTTCAAGTCGTAGCACTAGGCCTCACATGTCAAAGGATGTCAGGTGGGCAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAAACACTTCAATCTTTTAAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCGGAACTAATCGGCACTAGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTttggaaagaagaaagaagatgcCTAGGGCTCAAActgaaagagaaatattaaGGATCCTGGATCATCCTTTTCTTCCTACGCTGTATGCACAATTTACATCAGATAATCTATCGTGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAAAAGCAGTTTGGTAGAAGTTTCTCGGAGCTAGCAGCAAGgttttatgttgttgaagtCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCCGAAAACATTCTTGTTCGAGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAACGCTTCTGAAATCATCTTCTGATGTTGACCCTGCAAAAATTTCTGGTCTAAGTGCACAATCAAGTTGCATTGAGCCATTCTGCATTGAACCGTCTTGTCAAGTTCCATGCTTCAGCCCAAGATTCTTACCTGCTGCTGCAAAGGCAAGGAAATTAAAAGTTGATCTTGCTGCCCAGGTCAGATCATTGCCACAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTTGGTACACATGAATACTTGGCTCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTATATGGTAGAACACCCTTCAAAGGTTCAAACAATGAAGAAACATTGGCGAACGTAGTGTTGCAGAGTCTTAGATTCCCTGACGACCCATTTGTTAGTTTCCAAGCAAAGGATCTGATTAGAGGATTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCAGCTGAAATTAAAAAGCATCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATTCGTTGCGCTGTCCCTCCAGAACTTCCAGACTTTTATGATTTTGGAGTTTCAGACATGATGATGAACTCACAGGGGAAGGGTGCTAAGTACTTAGAGTGTAAAGAAGGAAAGCATGTAGAATTCGAGTTGTTTTAA 2625 0.4133 MGSFSGTCEIVEAREELNTRKAPGIYQSSSQCSTSEKNQKLSVLKLGYKDDLDDDINKLFESIALKSSSRDLGLLQYGTSPKLKSALKKPITMGVPRSPRVGTSEPVNLKQALRDLCISKASEMAAMKRLSKSTASPRISEAGKIQTLYNSVVAETSRSGPSFVESKGHQIEISLMPEKSKSLSLEKTSQSYQTAEIASSSQNIHLSREIAVATTQYGSGTSLIQSDLACSSSEVGIQSQRVVPVETEEQASASSPSLYNTFGSQSEVPKNASSPKKLGNKVSMSNPGRKGRLQTVSSSSTSVNGNRVNKLPRHAPRTVKSVIKNKNLSKQKLKEDSCSASCGPTATPNEVNKPVPGTPRLICERCRCALGNTSEEKNQDIVALDCTSPGNGVNLSNVHSVSKKPGLLSTSGIKSKTVAKVKNTKLKEQLEFSQSSKSSHGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWAAIRHAQMQHGVLGLKHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQFGRSFSELAARFYVVEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLKSSSDVDPAKISGLSAQSSCIEPFCIEPSCQVPCFSPRFLPAAAKARKLKVDLAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQSLRFPDDPFVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKKHPFFEGLNWALIRCAVPPELPDFYDFGVSDMMMNSQGKGAKYLECKEGKHVEFELF 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0886 874 SUPERFAMILY Protein kinase-like (PK-like) 463 843 IPR011009 -
Ssu4g0886 874 CDD STKc_phototropin_like 488 840 - -
Ssu4g0886 874 SMART serkin_6 490 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0886 874 MobiDBLite consensus disorder prediction 246 311 - -
Ssu4g0886 874 Pfam Protein kinase domain 491 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0886 874 Pfam Protein kinase domain 719 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0886 874 MobiDBLite consensus disorder prediction 246 308 - -
Ssu4g0886 874 Gene3D Transferase(Phosphotransferase) domain 1 570 638 - -
Ssu4g0886 874 Gene3D Phosphorylase Kinase; domain 1 488 569 - -
Ssu4g0886 874 PANTHER FLIPPASE KINASE 1-RELATED 1 874 - -
Ssu4g0886 874 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 874 - -
Ssu4g0886 874 MobiDBLite consensus disorder prediction 430 467 - -
Ssu4g0886 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Ssu4g0886 874 ProSiteProfiles Protein kinase domain profile. 490 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0886 874 MobiDBLite consensus disorder prediction 430 463 - -
Ssu4g0886 874 Gene3D Transferase(Phosphotransferase) domain 1 715 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0886 Ssu-Chr4 13882622 13886156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0886 1 874 AGC Kinase Gene Family AT3G52890 52.659 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu4g0886 Pkinase 2.8e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0886 - K08286 gmx:100792120 1482.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0886 4 13882622 13886156 Ssu7g2546 7 50088194 50092816 PCT