Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0884 ATGGACGAaaCTGAACTTTGTGGATGGGGAGTGGAGGCCGCCGAAACAATCGATAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGACGATGCTTTATGTGAAGAAAGGCTTTGGGACATGAAATACAGGGGCGTACAGAATTTTTACATGTGTGAGATTCGGAAAGATTTCACAATAGATGCAACTTTCAAAGGAAATACTTCACGCTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCTGCTCGTTCAATAGAAGCTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCAGGAAATTGTCAAGGCTTTCTAGGGACGAAAAAGAAAATTGGCAAGCTAGACCTCTGTTGGGGTTCAAAACGTAAGCGAACATCAAATGCTTGCATTACGTTGGTAACAACTGTATGA 501 0.4152 MDETELCGWGVEAAETIDKGGFIIEYIGEVIDDALCEERLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEAGEPLTYDYRFVQFGPEVKCHCGAGNCQGFLGTKKKIGKLDLCWGSKRKRTSNACITLVTTV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0884 166 Gene3D SET domain 1 154 IPR046341 -
Ssu4g0884 166 PANTHER SET DOMAIN PROTEINS 3 164 - -
Ssu4g0884 166 Pfam SET domain 8 113 IPR001214 GO:0005515
Ssu4g0884 166 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 3 164 - -
Ssu4g0884 166 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 165 IPR025787 -
Ssu4g0884 166 ProSiteProfiles SET domain profile. 1 114 IPR001214 GO:0005515
Ssu4g0884 166 SMART set_7 1 120 IPR001214 GO:0005515
Ssu4g0884 166 ProSiteProfiles Post-SET domain profile. 120 136 IPR003616 -
Ssu4g0884 166 SUPERFAMILY SET domain 4 133 IPR046341 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0884 4 136 C2H2 Transcription Factor Family AT2G23740 38.158 1.38e-21 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu4g0884 SET 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0884 - - aprc:113859744 337.035