Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0881 ATGAAGGTCATCGCCGCCTATTTGCTTGCCGTCTTGGGAGGCAACGCAGCCCCTTCCGCCGATGACTTAAAGGACATCCTTGGCTCCGTTGGAGCAGATGCCAATGACGACAATATCAGTCACCTTTTGTCTGAAGTGAAGGGCAAAGACATTGCGGAGCTTATTGCCGCCGGTAGGGAAAAGTTGGCCTCAGTGCCTTCTGGCGGTGGTGCGGCCGTTGCCGTGGCCGCCGCTCCCACCGGAGGTGGTGCTGCTGCTCCGGCCGCCGCCGAATCGAAGAAggaggaaaaggaagaagagaaagaggaatcGGATGacGATATGGGTTTCGGTCTCTTTGATTAA 345 0.5217 MKVIAAYLLAVLGGNAAPSADDLKDILGSVGADANDDNISHLLSEVKGKDIAELIAAGREKLASVPSGGGAAVAVAAAPTGGGAAAPAAAESKKEEKEEEKEESDDDMGFGLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0881 114 MobiDBLite consensus disorder prediction 82 114 - -
Ssu4g0881 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
Ssu4g0881 114 Gene3D - 1 59 IPR038716 -
Ssu4g0881 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 114 - -
Ssu4g0881 114 MobiDBLite consensus disorder prediction 100 114 - -
Ssu4g0881 114 Pfam 60s Acidic ribosomal protein 18 113 - -
Ssu4g0881 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Ssu4g0881 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0881 Ssu-Chr4 13832653 13833319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0881 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 66.667 1.37e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0881 K02943 - gmx:100787024 129.798