Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0879 ATGAACGTGACGATGGATGCAGAATCAGAGAAGCGCTATGCATCGacctcttcttctccttctccatCTTCTTCTTATTCGTCTTCGTGCGAGCGTTTGGATCGGCTCGTCGACACGGAGGAGATTGAAGCGGCGGAGACTCTGGCGCAGTTGGCAATGTGCGAGACTCACTCCGCCGATAAACGGTGCGCCAAACGAGGCACGAGGCGAGTCACGCCCGAGTCACCAATTCTGGACTCGGATCTCTCTCACTCTCCCCTTGGGCCTGGGGGCCAAGCTATTGCAGGTCAGCAGCTAGATGAAAAAATACCCACTACTACATCTGTAGAAACAGAAAGGATTCAGCAGGATGACTGCTCAAGACACATGAAGGTGGAGCAGGATGCTGATTTATTACCTAATGCAAGTTACTCTTTAGTTCGATGCAGCAAGGCAAGGCGAAATTTAACTGAGgaagaaaaagaagcaaGGAGGATACGCAGGATATTGGCAAATAGAGAGTCAGCTAGGCAGACAATTCGCCGTAGGCAGGCTCTGTGTGAGGAGTTAACCAGAAAAGCTGCCACTTTGGTGGTGGAGAATGAAAACCTAAAGAGGgagaaagagttgGCTTTGAAAGAGTATCAGTCTTTGGAGACTACAAATAAGCACTTAAAGGCACAAATAGCCAAGTCAATAAACACTGAAGTGGAGAAAACTCCTGTTGAGCCTGAGTCATCATCTGTGGCTGGGGTAACACCTTTGTCTGGTAACAGTCCATGGTTCCTTTATAACCATTTTACAGTTCCACAAATATTTTGGCCTTCCATCCTTCCGTCTTCTAATCCAGTTCATTTACAAAATACATCATTTAATTCCATCACCATTCCATCTAATGCTAATATTCCGTGTTCTTCTGAGTCTGAATCACGCCACAAGCAAAATAACCTTATAAATGATAATCGAACACAAAATATGTTTCCATATCCTTGGTTATTCCCTCTTCCACAGTTTGGAAATGGACAATCATCACCTTCCAGTAGCCtgaaaaataaacaagataATGTTTCTCTAGGTAAACAATGTAGTTCTAGTTCATCTTTGAATACACTGGCAAATGTGGACTATCAAGCAGCTCTACCTATCAAACTTAAAACAGAAGCTTCTGGCTGGACAGAGGCCAGACCTATTGATGACCCTGGTTGCGCCACTCCAAGATTTTCTTTGGATGGAGGTGAGAAGAAAACAGGATGTCACATTATAGAAAAGTTTCATGGACCTGCACTTGGTTGTAATGGTCATGCTTCTGCTGTCAAACTAGAGCACGAACTTCAATTACTTCCTGCTCCTAACAACAAAGTATCTTCAACAGCTTATATTGCAACTTCTTCACTGGAAAAGAAACAAGAACAGTTCATTTGCCAGGGGAAAAATCTGGCAGATGCAGTTGCTGCGGCAGAAGCAAGAAAGAGGAGAAGGGAACTAACAAAGCAGAAAAGCATCCATAACCGCCAGTCCCGGATGCACTGTTAG 1512 0.4272 MNVTMDAESEKRYASTSSSPSPSSSYSSSCERLDRLVDTEEIEAAETLAQLAMCETHSADKRCAKRGTRRVTPESPILDSDLSHSPLGPGGQAIAGQQLDEKIPTTTSVETERIQQDDCSRHMKVEQDADLLPNASYSLVRCSKARRNLTEEEKEARRIRRILANRESARQTIRRRQALCEELTRKAATLVVENENLKREKELALKEYQSLETTNKHLKAQIAKSINTEVEKTPVEPESSSVAGVTPLSGNSPWFLYNHFTVPQIFWPSILPSSNPVHLQNTSFNSITIPSNANIPCSSESESRHKQNNLINDNRTQNMFPYPWLFPLPQFGNGQSSPSSSLKNKQDNVSLGKQCSSSSSLNTLANVDYQAALPIKLKTEASGWTEARPIDDPGCATPRFSLDGGEKKTGCHIIEKFHGPALGCNGHASAVKLEHELQLLPAPNNKVSSTAYIATSSLEKKQEQFICQGKNLADAVAAAEARKRRRELTKQKSIHNRQSRMHC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0879 503 CDD bZIP_plant_GBF1 158 209 IPR045314 GO:0003700|GO:0006355
Ssu4g0879 503 MobiDBLite consensus disorder prediction 335 357 - -
Ssu4g0879 503 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 8 498 - -
Ssu4g0879 503 Coils Coil 142 162 - -
Ssu4g0879 503 MobiDBLite consensus disorder prediction 62 85 - -
Ssu4g0879 503 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 155 218 IPR004827 GO:0003700|GO:0006355
Ssu4g0879 503 PANTHER G-BOX-BINDING FACTOR 3-RELATED 8 498 IPR044827 GO:0003700|GO:0006355|GO:0043565
Ssu4g0879 503 SMART brlzneu 153 217 IPR004827 GO:0003700|GO:0006355
Ssu4g0879 503 Coils Coil 478 498 - -
Ssu4g0879 503 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g0879 503 Pfam bZIP transcription factor 153 215 IPR004827 GO:0003700|GO:0006355
Ssu4g0879 503 Coils Coil 166 221 - -
Ssu4g0879 503 SUPERFAMILY Leucine zipper domain 157 212 IPR046347 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0879 133 503 bZIP Transcription Factor Family AT1G19490 35.526 1.78e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0879 bZIP_1 1e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0879 - - gmx:100788624 781.941