Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0873 ATGGCGGAAGAACACCGATGCCAAGCTCCCGAAGGCCACAGACTCTGCGCCAACAACTGCGGCTTCTTCGGTAGCCCCGCCACCATGAATCTCTGCTCCAAATGCTACAGAGACATCCGTTTGAAGGAAGAAGAACAGGCCAAAACCAAATCCACCATCGAAACCGCTCTCTCTTCATCCGTCACCGCCGCCGTTGCCTCCGCCGCCGCCTCCTTGGCGGCGCCGGTAGAATCCCTCCCTCGGCCGGCAGTTTCGGCAACCGCACCCGACGCGTGCTCGCCGCCTGTCAGTCGAACCGGTGCGGCGCGTGTCGGAAGCGCGTCGGGTTGA 330 0.6273 MAEEHRCQAPEGHRLCANNCGFFGSPATMNLCSKCYRDIRLKEEEQAKTKSTIETALSSSVTAAVASAAASLAAPVESLPRPAVSATAPDACSPPVSRTGAARVGSASG 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0873 109 Gene3D - 1 63 - -
Ssu4g0873 109 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Ssu4g0873 109 MobiDBLite consensus disorder prediction 78 109 - -
Ssu4g0873 109 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 86 - -
Ssu4g0873 109 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Ssu4g0873 109 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 56 - -
Ssu4g0873 109 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Ssu4g0873 109 PANTHER BNAC06G14100D PROTEIN 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0873 Ssu-Chr4 13684534 13684863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0873 1 41 C2H2 Transcription Factor Family AT3G52800 75.610 5.18e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0873 - - gmx:100527251 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0873 4 13684534 13684863 Ssu7g2559 7 50469529 50470026 PCT