Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0865 ATGGCTATGCGCATCTCTCCTCTGGTCTTGCCCGTGGCTTGGCTGGCCTCTCTGCCGGCATGGCTATTGGTTTCGTATGACGCTGtatttattgagaaatttatccaaacaaggcttatAGCCACTGCACATCAGCCAAAACTTTTTGTTGGAATGATTCGCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTACGGTCTCGTTGTTGGTATTATCCTGTCTTCTCGTGCTGGCTAG 237 0.4388 MAMRISPLVLPVAWLASLPAWLLVSYDAVFIEKFIQTRLIATAHQPKLFVGMIRILIFAEALALYGLVVGIILSSRAG 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0865 78 Pfam ATP synthase subunit C 39 73 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu4g0865 78 PRINTS Vacuolar ATP synthase 16kDa subunit signature 25 51 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu4g0865 78 PRINTS Vacuolar ATP synthase 16kDa subunit signature 52 75 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu4g0865 78 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 39 78 - -
Ssu4g0865 78 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 39 78 - -
Ssu4g0865 78 SUPERFAMILY F1F0 ATP synthase subunit C 26 74 IPR035921 -
Ssu4g0865 78 Gene3D - 20 78 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0865 Ssu-Chr4 13534842 13535701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0865 25 78 Primary Pumps ATPases(2) AT1G75630 64.407 6.01e-17 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0865 K02155 - sspl:121809605 66.2402