Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0864 atggtaGTTGAGGAGGGTAAGATGAACTCCCATGGCGAGGTGGAATCACGACTCCAGCAAGAAGCGAACAGGAACCACCATTCTCCATTCTCATCATCCTCCCTTGGAAGACAATCATCAATATACTCTCTCACACTAGACGAATTCCAGCAGAGTCTATTATGCGAGAGCGGCAAGAACTTCGGGTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGAGCGCCGAGGAGAACCAGGCCATAATAACCTCCTCCAACCTGCCTCTATCCCAAACCTGCCTAGAGAAAGGGACAACAACGATAAGGAAACAGCCAAGCCTCCCTCGCCAACCTTCACTGTCCCTCCCTCCACCTCTCTGCAGGAAAACCGTGGACGAAGTTTGGTCCCAGATTCAGAAAGAACAACAGAACAACAACAGCAATGACAACAACAGTGTTCTGAATACCGAGCCTGCCCCTCGCCAACCCACTTTTGGCGAGATGACTTTGGAGGATTTTTTGGTCAAGGCCGGGGTAGTTCGGGAACCTTGTGGACCACCACCGGCGTCACACTCTCAGCACCAGTACCAGCACCAGCATCAGCACCACCACCAGCATTACACGAATAACAACGCTGCAATGCCAGCAATGGCTTCTTCTTTTGTTGGTAGGCAAGTTATTGGTGGTGGTGCAGTGAGTAACGTGGTTGCACCGGCTTATCAAGTTGGGGAGGCTTCTGGTGGGTATGCTGGAAATGGAAAGAGGGATAGCGGTGGCGGGTATCAGACGCCGGCGGTTTGTTTCGGAGGGGGCGGGTATGGGGTGAGTATGGGAATGGGTGCGCCTGTCAGTCCGGCTAATTCATCAGATGGGATAGGGAATGATGGTGGTCAGTTTGGGCTTGACAAGGGTGGTTTGAGAGGTAGAAAGAGAATGGTGGATGGTCCTGTGGAAAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTAGAAGCAGAACTAAACCAATTAAGAGAAGAGAACGCCCAACTGAAACAGGCGCTGGCCGAGCACGAGAGGAGAAAGAAGCAACAGTGTTTTGAGGAAGTGAACGTTAGAGTTCAAACCAAAGCTCATAAAGCAAAAGAGAAACTGAGAGCTTTGAGAAGGAACATGAGTTGTCCTCCGTGA 1209 0.5054 MVVEEGKMNSHGEVESRLQQEANRNHHSPFSSSSLGRQSSIYSLTLDEFQQSLLCESGKNFGSMNMDEFLSSIWSAEENQAIITSSNLPLSQTCLEKGTTTIRKQPSLPRQPSLSLPPPLCRKTVDEVWSQIQKEQQNNNSNDNNSVLNTEPAPRQPTFGEMTLEDFLVKAGVVREPCGPPPASHSQHQYQHQHQHHHQHYTNNNAAMPAMASSFVGRQVIGGGAVSNVVAPAYQVGEASGGYAGNGKRDSGGGYQTPAVCFGGGGYGVSMGMGAPVSPANSSDGIGNDGGQFGLDKGGLRGRKRMVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENAQLKQALAEHERRKKQQCFEEVNVRVQTKAHKAKEKLRALRRNMSCPP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0864 402 MobiDBLite consensus disorder prediction 101 120 - -
Ssu4g0864 402 MobiDBLite consensus disorder prediction 135 158 - -
Ssu4g0864 402 MobiDBLite consensus disorder prediction 135 153 - -
Ssu4g0864 402 CDD bZIP_plant_BZIP46 317 371 - -
Ssu4g0864 402 Coils Coil 333 370 - -
Ssu4g0864 402 SUPERFAMILY Leucine zipper domain 317 361 IPR046347 GO:0003700|GO:0006355
Ssu4g0864 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 320 335 IPR004827 GO:0003700|GO:0006355
Ssu4g0864 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 315 367 IPR004827 GO:0003700|GO:0006355
Ssu4g0864 402 Coils Coil 377 397 - -
Ssu4g0864 402 SMART brlzneu 313 378 IPR004827 GO:0003700|GO:0006355
Ssu4g0864 402 MobiDBLite consensus disorder prediction 1 36 - -
Ssu4g0864 402 Gene3D - 315 366 - -
Ssu4g0864 402 Pfam bZIP transcription factor 317 364 IPR004827 GO:0003700|GO:0006355
Ssu4g0864 402 MobiDBLite consensus disorder prediction 1 22 - -
Ssu4g0864 402 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 8 400 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Ssu4g0864 402 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 8 400 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0864 Ssu-Chr4 13515510 13518197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0864 1 372 bZIP Transcription Factor Family AT2G36270 50.000 7.85e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu4g0864 bZIP_1 2.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0864 K14432 - gmx:100818567 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0864 4 13515510 13518197 Ssu4g0864 4 13515510 13518197 ECH
Ssu4g0864 4 13515510 13518197 Ssu7g2571 7 50831251 50833367 PCT