Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0857 ATGAGTAAGCTACAAAGTGATGCACTGCGAGAGGCCATTTCCCAGGTGGTTAGTAATTCAAAGGAGAAAAATCGCAAATTCACGGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGCGGTTCTGTTAAGCTTCCCCATATTCCACGCCCTAAGATGAAGATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCAGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAAAAactcaataaaaacaaaaaacttgtgAAGAAGCTTGCCAAGAAGTATCATGCTTTCCTGGCTTCTGAAGCTGTCATCAAGCAAATTCCTCGTCTTCTCGGCCCTGGTTTAAATAAGGCAGGTAAGTTTCCAACATTAGTGACTCATCAGGAATCCTTGGAGTCAAAAGTTAATGAAACAAAAGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCTGTTGGAAATTGCACAATGGAGGAGAAGCAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTtcattattgaagaaaaactgGCAAAATGTAAGTTTGGAGGCCttgtattacaattttaaatatttgagtaCTAAAGTCTTAAAGTCCAAATTAtcccattaa 672 0.3646 MSKLQSDALREAISQVVSNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVSLEALYYNFKYLSTKVLKSKLSH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0857 223 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 203 - -
Ssu4g0857 223 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 203 - -
Ssu4g0857 223 Gene3D - 19 200 - -
Ssu4g0857 223 CDD Ribosomal_L1 9 200 IPR028364 -
Ssu4g0857 223 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 205 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Ssu4g0857 223 Pfam Ribosomal protein L1p/L10e family 21 200 IPR028364 -
Ssu4g0857 223 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Ssu4g0857 223 SUPERFAMILY Ribosomal protein L1 13 202 IPR023674 -
Ssu4g0857 223 Gene3D - 65 154 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0857 Ssu-Chr4 13447906 13449661 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0857 1 200 Cytoplasmic Ribosomal Protein Gene Family AT5G22440 89.552 2.63e-117 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0857 K02865 - gmx:100527763 371.703