Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0851 ATGGGAGAAGGAGTTGCTAACTTTGAAGCAAGGAGTTCATCCACCACAAATGGTCGACCTCGAAAAAGAAGAATGCCTCCAATGATCCAAGATCATACCATGCATGGCAATGGTAATTTTTTCAATGGAGAAGGAGTTGGTAACTCTCAAGCAGGTCCATCGAATCAAAGTCAACCGGCAAATGAGAATATGGGTCCACCGAATTACGAAGAAGTGAGGACACTTCCGTTTTGGCCCCCGTTACCAAGGCCATTCTTTTGCAGTTGCTGTCAAGTTCTTAGACAAATGGTTCACATCAATGGTTCTAAGATTGAGAAGCTTGAGATCCATGGAACGATTGGGGTGATTAGCCATGCAATAATCCAGAATCAGCATAACACACCGGGTGGTCCTTCAAGTGACGCTCATCAAATGATTGATTTCTGCCACAGAGACGCACAATATATTAAGACTTTCCTGGTACAGTACTGTGCACAGCAGAGTGCATTGGGGTGCATTATTGTGGAAGATCCTATGTCTGCCTATTATGAGACCCTTTGCACTGGACTGGATTGGACTGAAGATTTCAGTGGCGAAGACGATGATTTGATTCCACCAAATGACATGGAGCAAGAGCCTGAGCCTGAGAAGACTTCAACTTCTAAACGTAAACGCGGAAAAAAGAGGAAGAAAATAGTGAAGATGACATTGAGTGATTTGAGCGGTGTCTTCTATTTACCAGTTGAGGCTGTAGCGGAACAACTGGGCGTATGCGTCACTTTCGTAAAGAATATTTGCCGTAATGCAGACTTAGATAGATGGCCCCAAAGAAAGGTGTCAAGCCTTAGGAGGAAGTTTGcaaaactcaaaagagcatTGGATTCACCAGATCCAGGGACAAGGGACAAGAACTAG 894 0.4351 MGEGVANFEARSSSTTNGRPRKRRMPPMIQDHTMHGNGNFFNGEGVGNSQAGPSNQSQPANENMGPPNYEEVRTLPFWPPLPRPFFCSCCQVLRQMVHINGSKIEKLEIHGTIGVISHAIIQNQHNTPGGPSSDAHQMIDFCHRDAQYIKTFLVQYCAQQSALGCIIVEDPMSAYYETLCTGLDWTEDFSGEDDDLIPPNDMEQEPEPEKTSTSKRKRGKKRKKIVKMTLSDLSGVFYLPVEAVAEQLGVCVTFVKNICRNADLDRWPQRKVSSLRRKFAKLKRALDSPDPGTRDKN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0851 297 MobiDBLite consensus disorder prediction 192 221 - -
Ssu4g0851 297 MobiDBLite consensus disorder prediction 1 68 - -
Ssu4g0851 297 MobiDBLite consensus disorder prediction 42 64 - -
Ssu4g0851 297 Pfam RWP-RK domain 227 275 IPR003035 -
Ssu4g0851 297 PANTHER PROTEIN RKD4 48 284 IPR044607 GO:0003700
Ssu4g0851 297 PANTHER RWP-RK DOMAIN PROTEIN 48 284 - -
Ssu4g0851 297 ProSiteProfiles RWP-RK domain profile. 209 296 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0851 Ssu-Chr4 13400183 13402103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0851 206 288 NLP Transcription Factor Family AT1G64530 39.759 1.34e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu4g0851 RWP-RK 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0851 - - ccaj:109790026 287.345