Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0847 ATGCAAAAAATGTCTGGGACAAGGCAGAGAGATGTAACGGCCCAAAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATGAAGAAgtagaggaggaggaagaagtggaagaggaggaggaggaagaggaagaagagacgCCCTCtaatgatgaagatgagatgAGAGTAGCGGATACTAAGGATGAAgttgagaaaaagaaacatgCCGAGCTTCTTGCGCTTCCACCTCATGGGTCTGAAGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGGGTCTTTTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAATGGAAAAGAATCCCGTGAAGCAAAAGGTTATTCTTTTGTGACCTTCAAGACAAAGGAGTTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAGAGAATAAAGTGCTCAACATCTCAAGCTAAGCATAGGTTGTTTATTGGTAATGTTCCTAGAAATTGGACTGAAGGAGATATGAAGAAAGTTGTTGCAGAGATTGGTCCTGGAGTCATTTCGGTGGAACTGTTGAAGGACCCACAGAGTTCTGGGCGTAATCGTGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAAACAGAAGATGTCAAACTCAAACTTTAAACTTGACAGCAATGCTCCAACAGTGAGCTGGGCTGATCCAAGGAATTCTGAATCATCTGCAACCTCTCAgGTAAAAGCAGTGTATGTAAAGAACCTTCCGGAAAACATTACTCAGGGTCGTCTTAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCAGCTAAAGCTGGGCAAGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCTATGAAGGCACTGAAGAGCTCAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAGATCAGAAGTCATTCGGGGCAGCAAATTCACAGAAGTCAGTTGGACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTATGGTGCTATAGGTGTAGGATATGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCCGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAACAGCCTCCTCCAATGCCAGTATTCCGACATGGGAGGAGTGGTGGCAGTAGCTCAAGCGGTGGGAAACGCAGTAATGATAATAACCACAACGGTGGGCATGGCCGATATCATCCCTACTAA 1446 0.417 MQKMSGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDLDGDNDQEETMEEEVEYEEVEEEEEVEEEEEEEEEETPSNDEDEMRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCQSVGEVSEVRIMNGKESREAKGYSFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQAKHRLFIGNVPRNWTEGDMKKVVAEIGPGVISVELLKDPQSSGRNRGFAFIEYYNHACAEYSKQKMSNSNFKLDSNAPTVSWADPRNSESSATSQVKAVYVKNLPENITQGRLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKSSEKYEIDGQTLECSLAKPQADQKSFGAANSQKSVGLPTYPPHLGYGMVGGAYGAIGVGYGAAGFAQPLMYGPGATPAGMAMMPMLLPDGRIGYVLQQPGLQQPPPMPVFRHGRSGGSSSSGGKRSNDNNHNGGHGRYHPY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0847 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Ssu4g0847 481 Gene3D - 269 394 IPR012677 -
Ssu4g0847 481 SMART rrm1_1 108 181 IPR000504 GO:0003723
Ssu4g0847 481 SMART rrm1_1 188 265 IPR000504 GO:0003723
Ssu4g0847 481 SMART rrm1_1 282 355 IPR000504 GO:0003723
Ssu4g0847 481 MobiDBLite consensus disorder prediction 1 89 - -
Ssu4g0847 481 MobiDBLite consensus disorder prediction 36 79 - -
Ssu4g0847 481 SUPERFAMILY RNA-binding domain, RBD 104 361 IPR035979 GO:0003676
Ssu4g0847 481 Gene3D - 188 268 IPR012677 -
Ssu4g0847 481 CDD RRM_SF 109 181 - -
Ssu4g0847 481 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g0847 481 Coils Coil 47 74 - -
Ssu4g0847 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Ssu4g0847 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 352 IPR000504 GO:0003723
Ssu4g0847 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 256 IPR000504 GO:0003723
Ssu4g0847 481 MobiDBLite consensus disorder prediction 454 469 - -
Ssu4g0847 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Ssu4g0847 481 PANTHER - 16 479 - -
Ssu4g0847 481 SUPERFAMILY RNA-binding domain, RBD 186 272 IPR035979 GO:0003676
Ssu4g0847 481 SMART rrm2_1 108 181 IPR003954 GO:0003676
Ssu4g0847 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 359 IPR000504 GO:0003723
Ssu4g0847 481 MobiDBLite consensus disorder prediction 437 481 - -
Ssu4g0847 481 PANTHER GEO13361P1-RELATED 16 479 - -
Ssu4g0847 481 Gene3D - 30 187 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0847 Ssu-Chr4 13329305 13333817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0847 109 426 Eukaryotic Initiation Factors Gene Family AT4G34110 25.753 1.03e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0847 K13161 - gmx:100798476 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0847 4 13329305 13333817 Ssu4g0847 4 13329305 13333817 ECH