Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g0847 | ATGCAAAAAATGTCTGGGACAAGGCAGAGAGATGTAACGGCCCAAAATCCAGAGTCACCAGAGGGGAACAGTGAGCCTGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATGAAGAAgtagaggaggaggaagaagtggaagaggaggaggaggaagaggaagaagagacgCCCTCtaatgatgaagatgagatgAGAGTAGCGGATACTAAGGATGAAgttgagaaaaagaaacatgCCGAGCTTCTTGCGCTTCCACCTCATGGGTCTGAAGTTTACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAGGGTCTTTTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAATGGAAAAGAATCCCGTGAAGCAAAAGGTTATTCTTTTGTGACCTTCAAGACAAAGGAGTTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAGAGAATAAAGTGCTCAACATCTCAAGCTAAGCATAGGTTGTTTATTGGTAATGTTCCTAGAAATTGGACTGAAGGAGATATGAAGAAAGTTGTTGCAGAGATTGGTCCTGGAGTCATTTCGGTGGAACTGTTGAAGGACCCACAGAGTTCTGGGCGTAATCGTGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAAACAGAAGATGTCAAACTCAAACTTTAAACTTGACAGCAATGCTCCAACAGTGAGCTGGGCTGATCCAAGGAATTCTGAATCATCTGCAACCTCTCAgGTAAAAGCAGTGTATGTAAAGAACCTTCCGGAAAACATTACTCAGGGTCGTCTTAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTCCAGCTAAAGCTGGGCAAGAAAAGAGCAGATTTGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCTATGAAGGCACTGAAGAGCTCAGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAGATCAGAAGTCATTCGGGGCAGCAAATTCACAGAAGTCAGTTGGACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTATGGTGCTATAGGTGTAGGATATGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCCGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAACAGCCTCCTCCAATGCCAGTATTCCGACATGGGAGGAGTGGTGGCAGTAGCTCAAGCGGTGGGAAACGCAGTAATGATAATAACCACAACGGTGGGCATGGCCGATATCATCCCTACTAA | 1446 | 0.417 | MQKMSGTRQRDVTAQNPESPEGNSEPEKPTDSDEQVDLDGDNDQEETMEEEVEYEEVEEEEEVEEEEEEEEEETPSNDEDEMRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCQSVGEVSEVRIMNGKESREAKGYSFVTFKTKELASKAIEELNNSEFKGKRIKCSTSQAKHRLFIGNVPRNWTEGDMKKVVAEIGPGVISVELLKDPQSSGRNRGFAFIEYYNHACAEYSKQKMSNSNFKLDSNAPTVSWADPRNSESSATSQVKAVYVKNLPENITQGRLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKSSEKYEIDGQTLECSLAKPQADQKSFGAANSQKSVGLPTYPPHLGYGMVGGAYGAIGVGYGAAGFAQPLMYGPGATPAGMAMMPMLLPDGRIGYVLQQPGLQQPPPMPVFRHGRSGGSSSSGGKRSNDNNHNGGHGRYHPY | 481 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g0847 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 107 | 185 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | Gene3D | - | 269 | 394 | IPR012677 | - | |
Ssu4g0847 | 481 | SMART | rrm1_1 | 108 | 181 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | SMART | rrm1_1 | 188 | 265 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | SMART | rrm1_1 | 282 | 355 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | MobiDBLite | consensus disorder prediction | 1 | 89 | - | - | |
Ssu4g0847 | 481 | MobiDBLite | consensus disorder prediction | 36 | 79 | - | - | |
Ssu4g0847 | 481 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 361 | IPR035979 | GO:0003676 | |
Ssu4g0847 | 481 | Gene3D | - | 188 | 268 | IPR012677 | - | |
Ssu4g0847 | 481 | CDD | RRM_SF | 109 | 181 | - | - | |
Ssu4g0847 | 481 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Ssu4g0847 | 481 | Coils | Coil | 47 | 74 | - | - | |
Ssu4g0847 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 179 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 283 | 352 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 256 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | MobiDBLite | consensus disorder prediction | 454 | 469 | - | - | |
Ssu4g0847 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 269 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | PANTHER | - | 16 | 479 | - | - | |
Ssu4g0847 | 481 | SUPERFAMILY | RNA-binding domain, RBD | 186 | 272 | IPR035979 | GO:0003676 | |
Ssu4g0847 | 481 | SMART | rrm2_1 | 108 | 181 | IPR003954 | GO:0003676 | |
Ssu4g0847 | 481 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 281 | 359 | IPR000504 | GO:0003723 | |
Ssu4g0847 | 481 | MobiDBLite | consensus disorder prediction | 437 | 481 | - | - | |
Ssu4g0847 | 481 | PANTHER | GEO13361P1-RELATED | 16 | 479 | - | - | |
Ssu4g0847 | 481 | Gene3D | - | 30 | 187 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g0847 | Ssu-Chr4 | 13329305 | 13333817 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g0847 | 109 | 426 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.753 | 1.03e-15 | 77.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g0847 | K13161 | - | gmx:100798476 | 685.641 |