Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0846 ATGGATACATCAAATCCTGCAGCCTTTGTAAATGCAGAACTATTGCACTTTTATGTTGGAAGGAGGGTACGGGCTCTGATGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGTAAAATCAACAGACGAGAAACAGCTAGTTGTAAAAGGATCACCCCCACCTTTTCCTCTTACAAATTTTGTAGAAGTTATTGGTATTGTTAACAGTGATAAGTCAATTAGTGCTGAGATATGGACCAATTTTGGTGATGCCGTTGATACGGTCAGCTACAATAAGCTTTGTCAGCTTGCAAATGGAGAATTTAAACACTTGTTCCTGATAAAAAGGAGTGTTCTTAGGCTGTGGTGCTTCCTTGGTTGGGTTGGGGGTTGCTATCAACTTAGAGAAAGCCCGGTCCAAAGGCCCAAGGCTAAATACCCCTGGACACCGCCGAGCAACAGTGAATTTGTCCGCCATAAGCATAAGGGCGCGTGGGCAGGATTAGGGTTGATTTTGGAGCTTCCATTTCGATTTCAACTTGCGCGCGATCAGtttcttatttcttacttttgttCCTTTGCCACCTTGTTCTCTGTGTGCGTTGTCCTCCGACAAATAGTTAAACAACAATTAAACTGGCCTCTATTTTCCGGGCAACTCTCGCCATCTAAGTTTCGAGAAATTCTGAAATTTGTTTCTCTGTAG 687 0.4265 MDTSNPAAFVNAELLHFYVGRRVRALMQVVRSDGGVVIVKSTDEKQLVVKGSPPPFPLTNFVEVIGIVNSDKSISAEIWTNFGDAVDTVSYNKLCQLANGEFKHLFLIKRSVLRLWCFLGWVGGCYQLRESPVQRPKAKYPWTPPSNSEFVRHKHKGAWAGLGLILELPFRFQLARDQFLISYFCSFATLFSVCVVLRQIVKQQLNWPLFSGQLSPSKFREILKFVSL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0846 228 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Ssu4g0846 228 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Ssu4g0846 228 CDD RPA3 6 106 - -
Ssu4g0846 228 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Ssu4g0846 228 Pfam Replication factor A protein 3 1 103 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu4g0846 228 Gene3D - 1 107 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0846 Ssu-Chr4 13322960 13328993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0846 1 107 Core DNA Replication Machinery Family AT4G18590 64.486 1.52e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0846 K10740 - gmx:100306641 184.111