Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0835 ATGGAAAATATGCCACCGGGTTATCGTTTCTACCCTACAGAAGAGGAGCTGATTTCGTTCTATCTGCACAATAGGCTTGAAGGAGAAAAGGAGGACATGAATCGAGTTATACCAGTCGTTGATATATACGACTACAACCCATCCCAACTCCCACAAATTTCAGGAGAGGCGAGTCTGAGGGACACGGAGCAATGGTTCTTTTTCGTTCCGAGGCAAGAGAGTGAAGCTCGAGGAGGAAGACCAAAGCGTCTCACAACTACTGGGTACTGGAAGGCTACAGGCTCTCCTAATCATGTTTATTCTTCTGATAATCGCATCATCGGCATTAAAAGGACTATGGTTTTCTATAGTGGAAGAGCTCCAAACGGAACCAAAACCGATTGGAAGATGAATGAGTATACGGCCATCAAAGGTGAACCATCCTCTTCAAATAAGGCAGTTCCTACGTTAAGGAAGGAATTCAGCTTATGCCGAGTGTACAAGAAATCAAAGTGCTTACGGGCATTTGATAGACGACCACCGCCAAGGAGGAACTATTCCGGGGCTCAAAATGCTGAAGAGCAACAAGGGGGTTCAACATCTTACGATTATCACCATAACCCTCGTCAAATGGTGGAGAGAAGTGCAACAAGTTCACCTGAGAGTTCATCCTCCGGAGACCATGACCAACACCCCCACGGTGAGGAAGCTACCCAAATGGAAGTTGACAACAACCCTTTTTTGGATTGGGAGAAAGTGGATTTGTTCCTGGGATCGGAACCGTGA 765 0.4627 MENMPPGYRFYPTEEELISFYLHNRLEGEKEDMNRVIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFVPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNRIIGIKRTMVFYSGRAPNGTKTDWKMNEYTAIKGEPSSSNKAVPTLRKEFSLCRVYKKSKCLRAFDRRPPPRRNYSGAQNAEEQQGGSTSYDYHHNPRQMVERSATSSPESSSSGDHDQHPHGEEATQMEVDNNPFLDWEKVDLFLGSEP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0835 254 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Ssu4g0835 254 MobiDBLite consensus disorder prediction 181 218 - -
Ssu4g0835 254 SUPERFAMILY NAC domain 2 162 IPR036093 GO:0003677|GO:0006355
Ssu4g0835 254 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 247 - -
Ssu4g0835 254 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Ssu4g0835 254 Gene3D NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Ssu4g0835 254 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 247 - -
Ssu4g0835 254 MobiDBLite consensus disorder prediction 168 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0835 Ssu-Chr4 13118355 13120295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0835 7 173 NAC Transcription Factor Family AT5G22380 62.500 1.97e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g0835 NAM 5.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0835 - - gmx:100800056 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0835 4 13118355 13120295 Ssu4g0835 4 13118355 13120295 ECH