Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0828 ATGGTATGTGTTGAGCCCGTTTACTCAATGAATATGCGGATGCAATGTCTCTGCAACACTCCAATTGAATTCCATTCCATGGCGGCCGTCAGAAAAATAATTGAGGCCAATAAAACCTTGTCgccctctcttctctcttttcgcCGGGGAATTGCTTACAAGCTTTTCGTTGGAGGACTGTCCTTCTACACCACAGAGAAAGCATTGTCAGATACGTTCTCCAATTACGGgcaagttattgaagCTAAAATTGTAACAGATAGGGTGTCAGACAGATCTAAGGGATTTGGGTTTGTCACCTTTGCTTCACAAGACGAGGCCGAGAATGCCATAGCAGAGATGAAGGGAAAGACATTAAATGGACGTGTTATCTTTGTTGATTATGCAAAACCCAATATCAACACTGGTGGTGGAATGCCAATTGCCAGAGGACCTCCTGAACCAACACCAGATACTTGA 459 0.4031 MVCVEPVYSMNMRMQCLCNTPIEFHSMAAVRKIIEANKTLSPSLLSFRRGIAYKLFVGGLSFYTTEKALSDTFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIAEMKGKTLNGRVIFVDYAKPNINTGGGMPIARGPPEPTPDT 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0828 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Ssu4g0828 152 PANTHER TRANSFORMER-2-RELATED 27 151 - -
Ssu4g0828 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Ssu4g0828 152 SUPERFAMILY RNA-binding domain, RBD 53 144 IPR035979 GO:0003676
Ssu4g0828 152 Gene3D - 48 146 IPR012677 -
Ssu4g0828 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 27 151 - -
Ssu4g0828 152 SMART rrm1_1 54 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0828 Ssu-Chr4 13004459 13005891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0828 55 137 Eukaryotic Initiation Factors Gene Family AT4G34110 35.294 1.95e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0828 - - var:108327579 236.884