Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0825 ATGTCGATAAACCACTACTCACCAGAAACGAGACTATACTGGAGCGAGCAACAACCCTCCACGTGGCTCAACACCTCTCCCGCGCCCCGTTTCAACCTAAACGACACCCGAGACGAGGACGAGGAGGAAGACGACGTCGTCGTGGCGGACAGCGCTCAAGGCACACAAGAAGAGGACAAAGAAGCGATGTTCGAGAAGCCATTGACGCCCAGCGACGTGGGCAAGCTGAACCGCCTCGTCATCCCCAAACAGCACGCCGAAAAGCACTTCCCGCTCGACGCGTCCGGAGACACCGCCAAGGGTCTCTTGCTGAGTTTCGAGGACGAGTCCGGCAAGTGCTGGCGATTCCGTTACTCCTATTGGAACAGTAGCCAGAGCTACGTTTTGACCAAAGGCTGGAGCCGTTACATCAAGGACAAACGCCTCCACGCTGGCGACGTCGTTTTGTTCCACAGACACCGCCTCCATCCTCAACGCTTCTTCATCACCTGCACCCGCCGCCAAACCAACCCGCCCGCCCACGTTAGCCCCACCGCCAGATCGGCCTTCTATTATCCTGCGCATCATCTCCCCTTCCCATACCAACCTCACTCTCTTCATGCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCGTTGGGGAACGGTTCAAGTGGGAGGGTGCTAAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAATGATTCCGAAACCTCCACACCAGAATGCTCCTACACTGTGTCGTCAACCCAGGGTACACTTACCCACCACTTATACCACCACCACCCCCATCAAACTTCTTATTCTTCTTCAAACCCTCACCGTCACATGGTACGTCAACAACCATACTAG 858 0.5571 MSINHYSPETRLYWSEQQPSTWLNTSPAPRFNLNDTRDEDEEEDDVVVADSAQGTQEEDKEAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDASGDTAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYIKDKRLHAGDVVLFHRHRLHPQRFFITCTRRQTNPPAHVSPTARSAFYYPAHHLPFPYQPHSLHAGGGSQGQNETTPLGNGSSGRVLRLFGVNMECQPDNDSETSTPECSYTVSSTQGTLTHHLYHHHPHQTSYSSSNPHRHMVRQQPY 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0825 285 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 32 251 - -
Ssu4g0825 285 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 251 IPR044800 GO:0003700
Ssu4g0825 285 Gene3D - 51 178 IPR015300 -
Ssu4g0825 285 MobiDBLite consensus disorder prediction 15 67 - -
Ssu4g0825 285 MobiDBLite consensus disorder prediction 266 285 - -
Ssu4g0825 285 SUPERFAMILY DNA-binding pseudobarrel domain 59 168 IPR015300 -
Ssu4g0825 285 MobiDBLite consensus disorder prediction 262 285 - -
Ssu4g0825 285 SMART B3_2 64 167 IPR003340 GO:0003677
Ssu4g0825 285 MobiDBLite consensus disorder prediction 201 218 - -
Ssu4g0825 285 ProSiteProfiles B3 DNA-binding domain profile. 64 168 IPR003340 GO:0003677
Ssu4g0825 285 CDD B3_DNA 63 154 IPR003340 GO:0003677
Ssu4g0825 285 Pfam B3 DNA binding domain 64 163 IPR003340 GO:0003677
Ssu4g0825 285 MobiDBLite consensus disorder prediction 195 220 - -
Ssu4g0825 285 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0825 Ssu-Chr4 12958834 12960243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0825 60 254 RAV Transcription Factor Family AT5G06250 50.000 5.64e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu4g0825 B3 1.2e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0825 - - var:108328437 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0825 4 12958834 12960243 Ssu4g0825 4 12958834 12960243 ECH
Ssu4g0825 4 12958834 12960243 Ssu7g2610 7 51539124 51541432 PCT