Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0801 ATGGCCGATAAGCAACCCCCCTTGAACGGTGCCTATTACGGCCCCGCCATTCCCCCGGCGGAGCAACCACACTACCGCCCTCACCGCGGCAGAAGCTGTTGTTGCTGCCTCTTCGGAATCTTATGGAAGATTCTGGTTGCACTCATCGTCCTCGTTGGCCTCGCAATCCTCATCTTCTGGCTGGTGGTTCAGCCCCGCTCCTTCAAGTTCTACGTCACCGAAGCCGACCTAACCCAATTCGAGTACTCCACCAACAACAACACGCTCCAGTACAACATGGTGCTCAACTTCACTGCACGCAACCCCAACAAGAAGCTCAGCATATACTACGACAAAGTAGAGGCATTAGCATTCTACGAGGGGGCCAGGTTCGCCAATTATGAGGTGATCACGCACATGAACTCCTTCCGGCAGTACAAGAAGAGCAGCAACCCCATGAGCGCTGTTTTCTCGGGGCAGCAAGTGCTGATGCTCGACAACGATCAAGTTTCTGAGTTCAACGAGGACAAGAGTGCTGGGGTTTACGACATCTATGTGAAGCTCTACTTCAGGATTAGGTTCAGGCTCGGGGACGTCATATCCCGTCGCTACAAGCCCAAGGTCAAATGTGACCTCAAAGTTCCCTTGAGTAACAATGGCAGCGTAACTCTGTTCGAGATCACCAAGTGTGATGTCGATTACTAG 684 0.5263 MADKQPPLNGAYYGPAIPPAEQPHYRPHRGRSCCCCLFGILWKILVALIVLVGLAILIFWLVVQPRSFKFYVTEADLTQFEYSTNNNTLQYNMVLNFTARNPNKKLSIYYDKVEALAFYEGARFANYEVITHMNSFRQYKKSSNPMSAVFSGQQVLMLDNDQVSEFNEDKSAGVYDIYVKLYFRIRFRLGDVISRRYKPKVKCDLKVPLSNNGSVTLFEITKCDVDY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0801 227 Pfam Late embryogenesis abundant protein 97 203 IPR004864 -
Ssu4g0801 227 PANTHER OS05G0367900 PROTEIN 18 225 IPR044839 GO:0098542
Ssu4g0801 227 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 18 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0801 Ssu-Chr4 12464211 12464894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0801 62 210 SNARE and Associated Proteins AT1G32270 34.228 1.11e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0801 - - gmx:100807701 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0801 4 12464211 12464894 Ssu4g0801 4 12464211 12464894 ECH