Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0800 ATGGCCGACAAGCAACCCCACTTGAACGGCGGCTATTACGGTCCCGCCATTCCCCCGGCGGAGCAACCACGCTACCGCCATCACCACGGAGGAAGCTGCTGTTACTGCCTCTTTGGAATCTTCTGGAAGATTCTGGTTGCACTCATCGTCCTCGTTGGCCTCGCAATCCTCGTCTTCTGGCTGGTGGTTCAGCCCCGCTCCTTCAAGTTCTACGTCACGGAAGCAGACCTTACCCAATTCGAGTACTCCACCAACAACAACACCCTCCAGTACAACATGGTGCTCAACTTCACTGCACGCAACCCCAACAAGAAGCTCAGCATATACTACGACAAAGTAGAGGCATTAGCATTCTACGAGGGGGCCCGGTTCGCCAATTACGATGTGATAACCCACATGAACTCCTTCCGGCAGTACAAGAAGAGCACCAGCCCTATGAGCGCTGTTTTCTCGGGGCAGCAAGTGCTGATGTTGGACAATGACCAAGTCTCTGAGTTCAACAAAGACAAGGGTGCTGGGGTTTATGACATCTATGTGAAGCTCTACTTCAGGATTAGGTTCAGGCTCGGGGACGTTATATCCAGTGACTACAAGCCCAAGGTCAAATGTGACCTCAAGGTTCCTTTGAGTAAAAGTGGCACCCTAACTCTGTTTGAGACCACCAAGTGTGATGTCGATTTCTAG 684 0.5175 MADKQPHLNGGYYGPAIPPAEQPRYRHHHGGSCCYCLFGIFWKILVALIVLVGLAILVFWLVVQPRSFKFYVTEADLTQFEYSTNNNTLQYNMVLNFTARNPNKKLSIYYDKVEALAFYEGARFANYDVITHMNSFRQYKKSTSPMSAVFSGQQVLMLDNDQVSEFNKDKGAGVYDIYVKLYFRIRFRLGDVISSDYKPKVKCDLKVPLSKSGTLTLFETTKCDVDF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0800 227 Pfam Late embryogenesis abundant protein 97 201 IPR004864 -
Ssu4g0800 227 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN 19 225 - -
Ssu4g0800 227 PANTHER OS05G0367900 PROTEIN 19 225 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0800 Ssu-Chr4 12442306 12442989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0800 62 210 SNARE and Associated Proteins AT1G32270 34.899 5.12e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0800 - - gmx:100807701 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0800 4 12442306 12442989 Ssu7g2633 7 52388014 52388715 PCT