Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0793 ATGCTCTGCCCTTCCGTACTACTCCTCTGcaccctcctcctcctcctttttcACCCGAGCGCCGCCGACCCAAACGACGCCAAAATCCTGCGGCAATTCCGAAACGGGTTGGACAACCCGGAGCTGCTGCCATGGCCCGACACCGGCGACGACCCGTGTGGCTGGAAATACATTTTCTGCGACAGTAGCAACAGAGTAAACCAGATTCAGGCGAAGGGGCTAAACCTGAGCGGGCCCCTGCCGCAGAACCTGAACCAGCTGGCCATGCTCTTCAACGTGGGCCTCCAGAACAACAGGCTCAACGGCCCATTACCGTCGCTCGGCGGCCTGTCCAAGCTCAAATACGCGTTCCTCGACAACAACGACTTCGACTCCATTCCTTCCGATTTCTTCGAGGGGCTCGAGAGCTTGGAAGTGATGGCGTTGGACCATAATAACCTCAACGGCACCACGGGCGGGTGGCAGTTACCTTCGGCGCTGCAAGGGTCAACGCAGTTGACCAACTTATCTTGTATGGGCTGCAACCTCGCCGGCCCAATACCCGATTTCCTCGGTACGATGAACTCGCTGTCGTTTTTGAAGCTCTCTAACAACAACTTAACCGGCGAGATTCCGAGGAGTCTTAACGGTTCCGCGTTGCAGGTCCTGTGGTTGAACAACCAGCAGGGTGGTGAGCGTCTCAGTGGGGGAATTGACGTTGTTGCCACTATGGTCTCGCTCACGAGTTTGTGGCTTCATGGGAACGCGTTCAGTGGGACAATTCCGGAGAAAATTGGGGATTTGAGTTCTTTGAAGGATCTTGATCTCAATGGGAACAACCTCGTTGGGTTGGTTCCCCAAGGTTTGGGGGACATGCTGCTGGACAACCTGGATTTGAGCAATAACCATTTGATGGGTCCGATTCCGAATTTGAAGGCGGGTAAAGTGTCGTATGATATTAACGATTTTTGTGTGAGCAAACCAGGGGTTCCTTGCGCGTTTGAGGTGATGGCGCTGTTGGGGTTTCTTGGTGGGTTGAATTATCCTCAGAATTTGGTTGATTCGTGGACTGGGAATGACCCTTGTGGGGGGCATTGGTTGGGGATAAAGTGCAATGCTGAGGGGAAGGTGAATATGATTAACTTGCCTAATTTTAATCTTAGTGGGAGTTTGGGTCCTTCTGTTGCAAACTTGGGTTCTCTTGTTGAGATTAGATTGGGGGGGAATAATATCAGTGGAGTAGTGCCTGGTAATTGGAGTAGTTTGGCATCTTTGAAATTGTTGGATCTGAGTGGGAATAACATTTCTCCTCCACTGCCAGAGTTTAAGACTGGATTGAAACCTATTGTTGAGGGGAATCCTCTGTTGAATGGTGGTACGAAAACGACTCCTTCAGGGAACAACAACCCATCAGCTGGATCTGGGAATGTTGAGCCTGTATCGGCTCACTCGAATTCTAGTTCGAGTGATTCTCGTGAAATAAAAAAGACCAAAAGGAAAGGGTTGGTTTCAATTGTGGCTCCCATTGCGAGTGTGGCGGCTGCGGCTTTTCTGCTCATTCCGCTCTCTGTATATTGTTTCAGGAGGAGGAAGGGTGGTTTCCAGGCTCCAGCTTCACTGGTAATTCACCCTAGGGATCCATCTGATTCGGACAGTGCTGTGAAGATAGCTGTTGCTAATAATACCAATGGAAGCATTTCCACTTTGACAGGGAGTGGGTCTGGGAGTAGGAACAGCAGTGGAATTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTAAGGATATCAGTTCAGGTTCTGAGGAATGTGACCAAGAATTTTGCACCCGAGAATGAGCTTGGCCGTGGCGGATTTGGGGTTGTTTATAAGGGAGAGTTGGATGATGGAACTAAAATTGCGGTGAAAAGAATGGAAGCTGGTGTGATTAGTAGCAAGGCCTTGGATGAATTCCAGGCTGAGATTGCGGTGCTATCGAAAGTCCGGCACCGCCATCTGGTGTCTCTTTTGGGTTATTCTATAGAAGGTAACGAAAGGATTCTAGTGTATGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCCATGAACTGGAGCCCCTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAGAGCGAAAGTCTCAGATTTTGGTTTGGTAAAACTTGCGCCTGAAGGAGAAAAATCTGTAGTGACCAGGCTTGCTGGGACTTTTGGATATTTGGCACCAGAATATGCAGGTGATTTTTTTActagttcttaa 2355 0.4858 MLCPSVLLLCTLLLLLFHPSAADPNDAKILRQFRNGLDNPELLPWPDTGDDPCGWKYIFCDSSNRVNQIQAKGLNLSGPLPQNLNQLAMLFNVGLQNNRLNGPLPSLGGLSKLKYAFLDNNDFDSIPSDFFEGLESLEVMALDHNNLNGTTGGWQLPSALQGSTQLTNLSCMGCNLAGPIPDFLGTMNSLSFLKLSNNNLTGEIPRSLNGSALQVLWLNNQQGGERLSGGIDVVATMVSLTSLWLHGNAFSGTIPEKIGDLSSLKDLDLNGNNLVGLVPQGLGDMLLDNLDLSNNHLMGPIPNLKAGKVSYDINDFCVSKPGVPCAFEVMALLGFLGGLNYPQNLVDSWTGNDPCGGHWLGIKCNAEGKVNMINLPNFNLSGSLGPSVANLGSLVEIRLGGNNISGVVPGNWSSLASLKLLDLSGNNISPPLPEFKTGLKPIVEGNPLLNGGTKTTPSGNNNPSAGSGNVEPVSAHSNSSSSDSREIKKTKRKGLVSIVAPIASVAAAAFLLIPLSVYCFRRRKGGFQAPASLVIHPRDPSDSDSAVKIAVANNTNGSISTLTGSGSGSRNSSGIGESHVIEAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSHELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAGDFFTSS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0793 784 Gene3D Ribonuclease Inhibitor 327 450 IPR032675 -
Ssu4g0793 784 SMART serkin_6 600 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0793 784 Gene3D Transferase(Phosphotransferase) domain 1 678 783 - -
Ssu4g0793 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 725 737 IPR008271 GO:0004672|GO:0006468
Ssu4g0793 784 SUPERFAMILY Protein kinase-like (PK-like) 576 779 IPR011009 -
Ssu4g0793 784 ProSiteProfiles Protein kinase domain profile. 600 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0793 784 Gene3D Ribonuclease Inhibitor 23 322 IPR032675 -
Ssu4g0793 784 Pfam Protein kinase domain 603 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0793 784 Pfam Leucine rich repeat 239 297 IPR001611 GO:0005515
Ssu4g0793 784 PANTHER OSJNBA0070M12.3 PROTEIN 10 778 - -
Ssu4g0793 784 SMART LRR_typ_2 134 162 IPR003591 -
Ssu4g0793 784 SMART LRR_typ_2 261 284 IPR003591 -
Ssu4g0793 784 SMART LRR_typ_2 187 211 IPR003591 -
Ssu4g0793 784 SMART LRR_typ_2 237 260 IPR003591 -
Ssu4g0793 784 SMART LRR_typ_2 110 133 IPR003591 -
Ssu4g0793 784 SMART LRR_typ_2 391 414 IPR003591 -
Ssu4g0793 784 SMART LRR_typ_2 415 437 IPR003591 -
Ssu4g0793 784 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 10 778 - -
Ssu4g0793 784 MobiDBLite consensus disorder prediction 446 488 - -
Ssu4g0793 784 Gene3D Phosphorylase Kinase; domain 1 565 677 - -
Ssu4g0793 784 MobiDBLite consensus disorder prediction 449 481 - -
Ssu4g0793 784 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
Ssu4g0793 784 SUPERFAMILY L domain-like 55 432 - -
Ssu4g0793 784 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Ssu4g0793 784 Pfam Leucine rich repeat N-terminal domain 329 365 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0793 Ssu-Chr4 12335824 12338178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0793 75 776 Receptor kinase-like Gene Family AT5G07280 32.503 8.31e-70 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu4g0793 Pkinase 3.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0793 - - gmx:100305366 1248.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0793 4 12335824 12338178 Ssu7g2641 7 52731770 52735290 PCT