Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0790 ATGGCGACATACTTTCATGGTAACTCCGAAATCCAATCAGGTGGCGCCGACGGACTCCAAACCCTCGTCCTCATGAACCCCGGCTACATCCACTACTCCGACGCGCCGCCGCCCTCACACGCCGCCGGAAACCTCGTGTTCCTCAACCCCGCCGCCGTTCCCGGCGGCACCAACAACTCCTTCAGCCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCTCTCCCGGCTTCGCAAGACCTCAACCACCACTCCATGCACGCGCACCACGACGTCTCGGCCATGCATGGCTTCCTTCCGCGCATGCAGTACAATCCCTGGAACGCGCTCGACCACGTCTCGGCGGCGCGTGAGACTCCACGCGCACAGCAGGGGCTGTCCCTGGGTTTGGGGCCGTTCCGGGAGGGTCAGGCGCCGGCGATGTCCGGCGACGACCTGCGCGTTTCTGGCGGGTCGCCGTCGTCGGCTTCTGGGGTTACCAACAACGGCGCTTCCGGCATTCAGAGCGTGCTTTTGAGCTCCAAGTACTTGAAGGCCGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAGTGGGATTGGCACTGAGCTGGCAAAGAAGAGTGGGGGAAAGACCAAGGTGATTGGAGAATCATCCGCAGCTGGCAGTGGAGATGGCTCAGTTGGTGGGGAAGGAAGTGGGAAGCGTAACTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATTGTGGTATCGTCATTTGAGCAAACTGCGGGGATTGGGTCTGCGAGGACTTACACTGCCCTTGCATTGCAAACAATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCGATTGCAGGGCAGGTTCGGGCTGCTAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTACGGCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCTTATCCCAAGGATTCGGACAAGCACTTGCTTGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCGAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAATGAAGGAGCATGAACAGAATGGGTCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTGCTATGAAAATGTCAGCTTCACAAGAGAAAGGTCCTGCCAACGAAACCGAAGCGAAAAGTTTCAATTCCAAACGAGACGTTTCTAAGAGCCAGAACACTGCCGCGGTTTCTAGACCATCAACATCACCACTTGGTGTGAATGTGAGAAACCAATCAGGATTCAGCTTCATTGGGTCATCAGAGCTAGAAGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATTAACATGGATGTGAAACCCCATGAGGCAAACAGTGAGCAGCTTTCAATGAAATTTGGAGATGAAAGGCAAGGCAGAAATGGGTCCTCTTTCATGGCAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTACACAAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACCCATCAAACATTTCTCCCAAACCAGAACATTCAACTGGGAAGAAGCTTGGACATTGGTGAACCTAACGAGTTTGGTGCCATAAACACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCGCAATTGTTGCCAGACTTTGTGACCTAA 2019 0.5111 MATYFHGNSEIQSGGADGLQTLVLMNPGYIHYSDAPPPSHAAGNLVFLNPAAVPGGTNNSFSPHAPPSHTQQFVGIPLPASQDLNHHSMHAHHDVSAMHGFLPRMQYNPWNALDHVSAARETPRAQQGLSLGLGPFREGQAPAMSGDDLRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNSGIGTELAKKSGGKTKVIGESSAAGSGDGSVGGEGSGKRNSELSTAERQEIQMKKAKLISMLDEVEQRYRQYHQQMEIVVSSFEQTAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHLLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHEQNGSEDKSSKSNEDSAMKMSASQEKGPANETEAKSFNSKRDVSKSQNTAAVSRPSTSPLGVNVRNQSGFSFIGSSELEGITQGSPKKPRNHEMMHSPNSVPSINMDVKPHEANSEQLSMKFGDERQGRNGSSFMANQTNFIGGFGQYPIGDIGRFDAEQFTQRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAINTSSPHSTAAYESISMQNPKRFAAQLLPDFVT 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0790 672 SMART HOX_1 358 422 IPR001356 GO:0003677
Ssu4g0790 672 MobiDBLite consensus disorder prediction 429 445 - -
Ssu4g0790 672 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Ssu4g0790 672 MobiDBLite consensus disorder prediction 472 495 - -
Ssu4g0790 672 Coils Coil 242 269 - -
Ssu4g0790 672 CDD homeodomain 358 419 IPR001356 GO:0003677
Ssu4g0790 672 MobiDBLite consensus disorder prediction 446 465 - -
Ssu4g0790 672 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Ssu4g0790 672 MobiDBLite consensus disorder prediction 119 165 - -
Ssu4g0790 672 SUPERFAMILY Homeodomain-like 359 425 IPR009057 -
Ssu4g0790 672 MobiDBLite consensus disorder prediction 509 528 - -
Ssu4g0790 672 MobiDBLite consensus disorder prediction 429 495 - -
Ssu4g0790 672 MobiDBLite consensus disorder prediction 151 165 - -
Ssu4g0790 672 Pfam Associated with HOX 173 309 IPR006563 -
Ssu4g0790 672 MobiDBLite consensus disorder prediction 204 240 - -
Ssu4g0790 672 Gene3D - 361 423 - -
Ssu4g0790 672 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 614 - -
Ssu4g0790 672 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 8 614 - -
Ssu4g0790 672 SMART prehox3 168 310 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0790 Ssu-Chr4 12183168 12185966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0790 1 671 Homeobox Transcription Factor Family AT2G35940 50.333 5.85e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu4g0790 POX 1.9e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0790 - - gmx:100810901 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0790 4 12183168 12185966 Ssu4g0790 4 12183168 12185966 ECH
Ssu4g0790 4 12183168 12185966 Ssu7g2644 7 52884502 52888079 PCT