Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0787 ATGAAAGAGCCCGTAACCACTGTAACAGGCATCACATACGACCGAGACAGCATTGAGCACTGGCTATTCACCAACAAGAACACCACATGCCCAATCACCAGACACCCTCTCCCTAAAGACTCTGACCTAACCCCAAATCACAACCTTCTCCGCCTAATCCAAGCTTGGTGCACCCAAAATGGTATTCATAGCATTCCTACCCCTAAGCCACCACTTAACAAGTTTCAAGTCCTCAAGATTCTCAAAGACCTCAAGGACCCCAAGCTGCAACTCATTAAGATCAAGGAATTGAAACTGCTAGCATCTCAGAACGAGAGAAATAAGGAGTGTTTACAACAGGCTGGTGTCCCAAAGGCCATGATCCTATTCTTGTTGACTTGTTTTAGAAAAGGTCAACTTGATAAGGGTCTAGAAGAAGCCCTTAGCTTATTGCAGTTTGTTGATGTGCCAGAAGAGGAAATAAAGCTTCTTCTAGCGGAAAACGATCAAATATTGGATTCCCTAACGTGGGTTTTGGGCTGTGATGAGGTGGAAAATTCAATTACTGTGCAATCCCACGCAATGACGTTACTCAAGAGAATCATTAAGAAAGCTAGCTCCAGCGTAATGGAGAGACTTAAACCTGAATTGTTTGAAATGGTTATGAAGGTTTTACGATGTGGGACTTCCCATCAAGGCATGAACGATGCTCTTCATGTCATGGTAAGCGCTTGCCACAGGGGGAGAAACTGGATCATGATGGTGGAAAGTGGTGCAGTTTTCGAACTCATAGAGATTGAGTTGGGGACACCTGAAAAGAGCACCACAGAACTCACCATGGAGATACTGGCTCATCTGTGTTCTTGTGCTAACGGCAGAGCTCAGTTTCTGAGTCACAAAGGTGCCATTGCTTTGTTGACGGAGCGAATCTTCACGGTTTCGCCGGTGGTGGATGACAGAGCGGTGCTTATTCTTTCATTGGTGTCTATGTTCTGTGCCACACCTGTGGTGCTTCAGGAGATGGTGGAGGTTGGAACTGTGTCAAAGCTTTGTAGGTTGGTTCAGAGTGATCATCATGGCACGTATCTGAAAGACAAAGCAAGGGAAATACTGAAGTCTCATGCTGACGTTTGGAAATATTCTCCTTGCATTTCTGATCGTGATCGGTCATTTTATGCGAGGTTATGTGAAATGGAATGTCATTCTATTCATAGCTCTATGCCAAATTAA 1209 0.4467 MKEPVTTVTGITYDRDSIEHWLFTNKNTTCPITRHPLPKDSDLTPNHNLLRLIQAWCTQNGIHSIPTPKPPLNKFQVLKILKDLKDPKLQLIKIKELKLLASQNERNKECLQQAGVPKAMILFLLTCFRKGQLDKGLEEALSLLQFVDVPEEEIKLLLAENDQILDSLTWVLGCDEVENSITVQSHAMTLLKRIIKKASSSVMERLKPELFEMVMKVLRCGTSHQGMNDALHVMVSACHRGRNWIMMVESGAVFELIEIELGTPEKSTTELTMEILAHLCSCANGRAQFLSHKGAIALLTERIFTVSPVVDDRAVLILSLVSMFCATPVVLQEMVEVGTVSKLCRLVQSDHHGTYLKDKAREILKSHADVWKYSPCISDRDRSFYARLCEMECHSIHSSMPN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0787 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 1 379 - -
Ssu4g0787 402 SUPERFAMILY RING/U-box 1 64 - -
Ssu4g0787 402 Gene3D - 75 370 IPR011989 -
Ssu4g0787 402 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
Ssu4g0787 402 Coils Coil 94 114 - -
Ssu4g0787 402 SUPERFAMILY ARM repeat 78 353 IPR016024 -
Ssu4g0787 402 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Ssu4g0787 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Ssu4g0787 402 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Ssu4g0787 402 PANTHER WDSAM1 PROTEIN 1 379 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0787 Ssu-Chr4 12152293 12153501 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0787 1 377 U-box Gene Family AT3G11840 39.387 3.98e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0787 - - gmx:100798446 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0787 4 12152293 12153501 Ssu4g0787 4 12152293 12153501 ECH
Ssu4g0787 4 12152293 12153501 Ssu7g2648 7 52933115 52936524 PCT
Ssu7g2649 7 52984792 52986039 Ssu4g0787 4 12152293 12153501 PCT