Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0786 ATGGACGAGATTGATGTTCCTTCCTTCTTCGTCTGCCCCATTTCGTTAGAAATCATGAAGGATCCAGTGACCCTCTCCACGGGCATCACCTACGACCGTGAATGCATCGAAACGTGGCTGTTTTCTAAGAAAAACAAGGCATGCCCCGTAACCAAACAACCCTTGTTAGATTACACCGATCTCACACCTAACCACACCCTTCGGAGACTCATTCAAGCGTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACTCCTAAGCCCCCCGTCAACAAAACCCAGATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCGCGCATGCCTCCGAAGACTCAAATCCATCGCTTCAGGAAGCGAAACAAACAAACGATGCATGGAAGCCGCTGGTGCCGTGGAATTCCTAGCATCCATTGTAATGAACAACAACGTCGATTCTTCGAATTCATCGGAGGCTGACCCAAATGATGGATTAGAGTTGAGAACAAGTGCAAGCGATGAAGCGTTGAGCATGCTTTATAGTCTTCATTTATCTGAACATAGTTTGAGGACTCTTCTAAGCTTCAAAAACGGAGAGTTTATTGAGTCTTTAACTAGAGTCATGCAGAAGGGGTTCTTCGAATCACGCGCTTACGCAGTGTTCTTGTTGAAGTCGATGTCCGAAGTGGCTGATCCTGTGCAATTATTGCATCTAAGAGAAGAACTGTTCGTGGAACTAGCACAAGTCTTGAAGGACAAGATTTCAGAGAAGACAACAAAAGCAACACTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAGGCTGTGGAAGCAGGAACCGTTCCCATTTTGATAGAGCTTCTTCTCGATTGCAAGGACAGAAAGCCTTGTGAGATGATGCTAGTGTTGTTGGAGACGCTGTGCCAGTGTGCTGAGGGAAGAGCAGAGCTTTTGAGCCATGGAGCAGGTCTTGCCATTGTTTCCAAAAAGATTCTAAGAGTTTCGACGTTGGCGAATGATAGGGCTGTTAGGATTCTTCTGTTTGTCGCCAAGTTCTCTGCGACTCCACACGTTGTTCAGGAAATGCTGAAACTGGGTGTGGTGGCGAAACTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCTAAGGAGAAGGCAAGAGAGATACTCAAATTGCATGCTCGGGCGTGGAGGAATTCTCCATGCATACCCAGCAATTTGCTTGGTTCATACCGGACTTTTGTGTGA 1254 0.4713 MDEIDVPSFFVCPISLEIMKDPVTLSTGITYDRECIETWLFSKKNKACPVTKQPLLDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKTQISKLLKDASHSPRACLRRLKSIASGSETNKRCMEAAGAVEFLASIVMNNNVDSSNSSEADPNDGLELRTSASDEALSMLYSLHLSEHSLRTLLSFKNGEFIESLTRVMQKGFFESRAYAVFLLKSMSEVADPVQLLHLREELFVELAQVLKDKISEKTTKATLQTLIQFSPWGRNRIKAVEAGTVPILIELLLDCKDRKPCEMMLVLLETLCQCAEGRAELLSHGAGLAIVSKKILRVSTLANDRAVRILLFVAKFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPSNLLGSYRTFV 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0786 417 SUPERFAMILY RING/U-box 3 82 - -
Ssu4g0786 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 414 - -
Ssu4g0786 417 SUPERFAMILY ARM repeat 110 381 IPR016024 -
Ssu4g0786 417 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Ssu4g0786 417 Gene3D - 97 403 IPR011989 -
Ssu4g0786 417 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Ssu4g0786 417 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Ssu4g0786 417 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ssu4g0786 417 PANTHER WDSAM1 PROTEIN 1 414 IPR045185 GO:0061630
Ssu4g0786 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0786 Ssu-Chr4 12114243 12115496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0786 1 413 U-box Gene Family AT3G52450 58.621 1.01e-172 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0786 - - gmx:100811258 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0786 4 12114243 12115496 Ssu4g0786 4 12114243 12115496 ECH