Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0783 ATGAACGACTTGTTCtccaccacctcctcctccCGCAGCGACCAACCGCCGCCATCGCCGGACCACCACGTCATCGAGATTCCCGGCGGTGGCGACGACGGAGGAGCGAACCTGCCCAAGTTCTTCGGCGACGTGGAATCCATAAAGGAGGAGCTGAAGGAGGTGGAGCGGCTGAAGCAGAGTCTGAAGAGGTCCCACGAACAGAGCAAGACGCTTCACCGCGCCAACGCGGTCAAGGACCTTCGCTCCGCTATGGAAGCTGACGTGGCACTCGCTCTCAAGAAGGCGAAGCTCGTCAAGCTCCAGTTGGAGGCCCTCGAACGCTCCAACGCCGATCGTCGGAGCCTCCCCGGTTGCGGTCCCGGATCCTCCTCCGACAGGACCCGAACCTCCGTCGCCGTCGGGCTgaagaagaagctgaaggaCTCCTTGGACGGGTTCAATGACCTCCGCCACCAGATCAACTCGGAATACCGTGAGACCGTTCAACGCCGCTACTTCACCGTCACCGGCGAGAATCCCGATGACAAAACCGTCGACCTCTTGATCTCTACCGGTGAGAGTGAGTGTTTCCTACAAAAAGCCATTGAAGAGCAGGGCAGGGGTAAAATTGAGGACACTATTAACGAAATTAAAGAGAGGCATGATGGTATGAAAGAGTTGGAGAAGAATCTAAAGGAGTTGCATCAGGTGTTCCTTGACATGGCAGTGCTGATACAATCTCAAGGGGAGCAATTGGACGATATAGAGAGCCACGTGGCAAGAGCTAACTCCTTCGTCAGAACTGGGACTCAGAAGCTGCAAACAGCAAGGAAGCAGCAGAAAAACTCCCGCAAATGCACCCGTTATGCTATCATCCTTCTTCTAGTGATCGTCTTGTTAGTGGTACTCTTCACTGTAAGACCATGGGAACATAATAGCACTGGTGGTAGCCACTAG 939 0.5272 MNDLFSTTSSSRSDQPPPSPDHHVIEIPGGGDDGGANLPKFFGDVESIKEELKEVERLKQSLKRSHEQSKTLHRANAVKDLRSAMEADVALALKKAKLVKLQLEALERSNADRRSLPGCGPGSSSDRTRTSVAVGLKKKLKDSLDGFNDLRHQINSEYRETVQRRYFTVTGENPDDKTVDLLISTGESECFLQKAIEEQGRGKIEDTINEIKERHDGMKELEKNLKELHQVFLDMAVLIQSQGEQLDDIESHVARANSFVRTGTQKLQTARKQQKNSRKCTRYAIILLLVIVLLVVLFTVRPWEHNSTGGSH 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0783 312 MobiDBLite consensus disorder prediction 1 40 - -
Ssu4g0783 312 CDD SynN 38 195 IPR006011 GO:0016020
Ssu4g0783 312 Coils Coil 204 228 - -
Ssu4g0783 312 Pfam SNARE domain 244 296 IPR000727 -
Ssu4g0783 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Ssu4g0783 312 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 13 302 - -
Ssu4g0783 312 CDD SNARE_syntaxin1-like 207 269 - -
Ssu4g0783 312 Gene3D - 36 168 - -
Ssu4g0783 312 Gene3D - 201 301 - -
Ssu4g0783 312 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu4g0783 312 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Ssu4g0783 312 SUPERFAMILY t-snare proteins 36 263 IPR010989 GO:0016020|GO:0016192
Ssu4g0783 312 SMART SynN_4 33 159 IPR006011 GO:0016020
Ssu4g0783 312 MobiDBLite consensus disorder prediction 1 17 - -
Ssu4g0783 312 SMART tSNARE_6 203 270 IPR000727 -
Ssu4g0783 312 PANTHER SYNTAXIN 13 302 IPR045242 -
Ssu4g0783 312 Coils Coil 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0783 Ssu-Chr4 12048909 12051045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0783 30 307 SNARE and Associated Proteins AT3G11820 69.784 6.40e-133 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0783 K08486 - rcu:8259763 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0783 4 12048909 12051045 Ssu7g2655 7 53080186 53082766 PCT