Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0782 ATGGACCTGGACAAGTTCTTCGAAGAAGTGGAATCGGTGAAGGAGGAGCTGAAGGAGCTAGAGCGTCTCCACCTAAGCCTCCGTGCTTCAAACCAAAACGGTAAAACGCTTCACAGCCCCAAGGGCTTTAGGGACCTTCGGTCTCGCATGGACCTGGACGTGGCTCTGTCCCTCACCAAAGCCAAGCTCGTCAAGGCTCGCCTGGAGGCTCTCCGCCGCGCCAGCCAAGCCACCCTCTCCTTGCCCGATTGCGGACCCGGTTCCTACTCCGACCGCACCCGAACCGCCCTCGTCGGCGCCTTGACCAAGAGCCTCAAACAGTCCATGGAGAGTTTCAATAACCTCAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGGGAGAATCCTGATCAAGAAACCATCGACCTTCTCATCTCTACGGGTGAGAGTGAAACTTTCTTACAGAAAGCCATAAAACAGCAAGGGAGAGCCACCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACAGtcaaagagatagagagaaatctACACGAGCTGCACCAAGTGTTTTTGGACATGGCAGTGTTGATCCAACCCCAGGGTGAACACTTGGATGACATAGAGAGCCACGTGGCACTTGCAAATTCCTTCGTGAGCAAAGGGGTACAGCAGCTGCAGGTTGTGCAGAATCATAAGAAGAACACCCGTAACTGGACCTGTTTTGCCATACTGCTGTTCATTATCATGTTGGTTATAGTTCTCCCTATTGTTTTCAGAAATTGA 804 0.5137 MDLDKFFEEVESVKEELKELERLHLSLRASNQNGKTLHSPKGFRDLRSRMDLDVALSLTKAKLVKARLEALRRASQATLSLPDCGPGSYSDRTRTALVGALTKSLKQSMESFNNLREQISYEYRDTVQRRYYAVTGENPDQETIDLLISTGESETFLQKAIKQQGRATIMDTIQEIQERHGTVKEIERNLHELHQVFLDMAVLIQPQGEHLDDIESHVALANSFVSKGVQQLQVVQNHKKNTRNWTCFAILLFIIMLVIVLPIVFRN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0782 267 ProSitePatterns Syntaxin / epimorphin family signature. 179 218 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu4g0782 267 CDD SNARE_syntaxin1-like 172 233 - -
Ssu4g0782 267 Pfam SNARE domain 211 261 IPR000727 -
Ssu4g0782 267 Coils Coil 3 30 - -
Ssu4g0782 267 SMART SynN_4 1 124 IPR006011 GO:0016020
Ssu4g0782 267 Pfam Syntaxin 5 208 IPR006011 GO:0016020
Ssu4g0782 267 SMART tSNARE_6 168 235 IPR000727 -
Ssu4g0782 267 SUPERFAMILY t-snare proteins 1 228 IPR010989 GO:0016020|GO:0016192
Ssu4g0782 267 Gene3D - 3 130 - -
Ssu4g0782 267 PANTHER SYNTAXIN-121 2 262 - -
Ssu4g0782 267 Gene3D - 161 265 - -
Ssu4g0782 267 CDD SynN 3 160 IPR006011 GO:0016020
Ssu4g0782 267 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Ssu4g0782 267 PANTHER SYNTAXIN 2 262 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0782 Ssu-Chr4 12039812 12041730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0782 1 247 SNARE and Associated Proteins AT3G11820 63.968 7.42e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0782 K08486 - gmx:100810727 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0782 4 12039812 12041730 Ssu7g2656 7 53100996 53103308 PCT