Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0779 ATGGCTGCTACGGCTTCTGTTTCCTCTTCTATCTGCAATAGAATAATATACAACCTCTCCTTCACCCACTCTTCCATTTCACTCACCAGCAACTTCCCTCAAAGACCCATATCCCAAAAACCTCTCACATTCAACCTCAAGTCCCAAAGTTTCAGCCTTTCCTTTCTCCCACTTCACCGTCTTTCCCCACCTTCCGCTGACTTTGATGGGTTGGAAGTGGCTCGGGACAGCACAGAGTCCCAACAAAGCTACCCAGAAACAGAAACCTTTGAAAAAGCAGATCAAGAGGAAGAGCAAAAGGTTTCAGACTCAAACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATAACGAATTCCCAATTGGCTGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGagCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTGCCCAAAGGAGGGGAAAGGTTAGTAATGGGGCCAAAAATACGGAACAACTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGACCTCACAGGGTCTTAGAGAAGCTTTTGCTGACCAGCCAGGCTTTTTGAGCGCCAAGGTCATCTATGAGAGAGACAGTGGACGATCTCGAGGTTTTGGGTTTGTTTCTTTTGAAACTGCTGGGGCTGCATCAGCTTCTTTGGACGCTATGAATGGTGTGgAGGTACAAGGTCGGCCCTTGCGGTTGAATTTGGCTGAAGCGAGGACACCTTCATCTCCTCCAGTAATTGAGGAAAATGCAGGAAGCAATGTTGAAAGCCTGGAATTGGTGTCTAGTGCCAGCACATAA 852 0.4789 MAATASVSSSICNRIIYNLSFTHSSISLTSNFPQRPISQKPLTFNLKSQSFSLSFLPLHRLSPPSADFDGLEVARDSTESQQSYPETETFEKADQEEEQKVSDSNDAGRLYVGNLPYSITNSQLAELFGEAGTVASVEQVGGRTVKVNFPEVPKGGERLVMGPKIRNNYRGFVDSPHKIYAGNLGWGLTSQGLREAFADQPGFLSAKVIYERDSGRSRGFGFVSFETAGAASASLDAMNGVEVQGRPLRLNLAEARTPSSPPVIEENAGSNVESLELVSSAST 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0779 283 Gene3D - 157 262 IPR012677 -
Ssu4g0779 283 SMART rrm1_1 109 174 IPR000504 GO:0003723
Ssu4g0779 283 SMART rrm1_1 178 251 IPR000504 GO:0003723
Ssu4g0779 283 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 139 265 - -
Ssu4g0779 283 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 138 - -
Ssu4g0779 283 Gene3D - 65 146 IPR012677 -
Ssu4g0779 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 249 IPR000504 GO:0003723
Ssu4g0779 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 138 IPR000504 GO:0003723
Ssu4g0779 283 PANTHER OS02G0815200 PROTEIN 139 265 - -
Ssu4g0779 283 SUPERFAMILY RNA-binding domain, RBD 174 259 IPR035979 GO:0003676
Ssu4g0779 283 MobiDBLite consensus disorder prediction 89 104 - -
Ssu4g0779 283 PANTHER OS02G0815200 PROTEIN 3 138 - -
Ssu4g0779 283 SUPERFAMILY RNA-binding domain, RBD 102 139 IPR035979 GO:0003676
Ssu4g0779 283 MobiDBLite consensus disorder prediction 67 105 - -
Ssu4g0779 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 255 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0779 Ssu-Chr4 12016456 12023279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0779 94 256 Eukaryotic Initiation Factors Gene Family AT3G16380 28.571 5.36e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0779 - - gmx:100814852 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0779 4 12016456 12023279 Ssu7g2659 7 53135065 53136997 PCT