Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0778 ATGGCGATGCATACTGTTTATCTTAAAGAACAAGAAGGAAGTGCACACAATTTTGTGGGGCCGTTGTCATCTGCAGCTCCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCCGTTCCTGCGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAACTGCCTAACTGCGTAGACCAACTTGCTGCTAGTAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGTAAAGGGCATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCACAAAAGCTTCAGACAACCATATCACTACAGTCATCACTTAGGGACTCCCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTTCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCGCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACAACTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCTCAAATTGACTAAACGTCGCAAGCCCTATATGCATGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACAAGGAATTCTGTTAATGGAAATGGTAGAAGTGGAAGTGAAGTGAACAAAACTGTTGGTGAACAATTGCAGTCCAGTGGCTCTCACAGTTCTGAACCCCTTCATTCTGAGGTTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGTTCGGAGGTGACTAGCATGTATTCGCGGGGAGGTCTCGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTCTGGCAGACATTATAGATGGTGGGCGCGGTATGATCATACCCCCCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 990 0.4535 MAMHTVYLKEQEGSAHNFVGPLSSAAPAPWWSAFGSQSVPAESCGQMKPFSLELPNCVDQLAASKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQKLQTTISLQSSLRDSHSRFEIGFSQPMICSKYPYTDQFYGLFSAYAPQISGRIMLPLNMTTDDGPIYVNAKQYHGIIRRRQSRAKAVLDLKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRNSVNGNGRSGSEVNKTVGEQLQSSGSHSSEPLHSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSLADIIDGGRGMIIPPKWVAAAGNCCNLKV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0778 329 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Ssu4g0778 329 Gene3D - 159 221 - -
Ssu4g0778 329 MobiDBLite consensus disorder prediction 217 276 - -
Ssu4g0778 329 MobiDBLite consensus disorder prediction 208 276 - -
Ssu4g0778 329 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 328 - -
Ssu4g0778 329 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Ssu4g0778 329 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Ssu4g0778 329 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Ssu4g0778 329 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Ssu4g0778 329 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 328 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0778 Ssu-Chr4 12009275 12013156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0778 1 329 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.272 1.61e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu4g0778 CBFB_NFYA 7.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0778 K08064 - gmx:100527677 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0778 4 12009275 12013156 Ssu7g2660 7 53193772 53198037 PCT