Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0777 ATGAAATCCACATGCAATGCCTCATTGCCTTGTCTTGATATATTTGGCTCAGCAATCCCAAATGCATTTTTCCTTGATCCCCACAACAAGCGGCTATACTTTTTCATACATAAGATGAACAACCCAGCAGTTAATTCCCCTGGATTCATTGGCTCAAGCAATATCAGTGGTTATAGTTACGGCATAGGAATTTCCATTGGAATTCTCTTGCTCATTATAACCATCACTTTAACTTCCTACTTCTGCACCAGAACACGTGTGGTAACTGCTCCATTCACTCGGAATAGGAGACGCACTCGTAGTGTCCTTGAACCACAGCACTCTATAGTGGATGTAAGTCTTGATGAAGCCACGATTCTGAGTTATCCAACCCTGCTTTACTCTGAGGCCAAGCTCGAGAAGTCTGATTCCACAGCAACATGCTGCTCCATATGTCTGGCTGATTACAAAGGTACTGACATGCTTCGGGTGCTACCTGATTGTGGGCACCAGTTCCACCTCAAGTGCATAGACCCGTGGTTGAGATTGCATCCCACTTGTCCAGTTTGTAGAACATCTCCACTCCCAACGCCACTCTCAACTCCTCTGGCGGAAGTGGTTCCGTTAGCAAGCAGATCACAGGATTCATAG 630 0.4571 MKSTCNASLPCLDIFGSAIPNAFFLDPHNKRLYFFIHKMNNPAVNSPGFIGSSNISGYSYGIGISIGILLLIITITLTSYFCTRTRVVTAPFTRNRRRTRSVLEPQHSIVDVSLDEATILSYPTLLYSEAKLEKSDSTATCCSICLADYKGTDMLRVLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPLPTPLSTPLAEVVPLASRSQDS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0777 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 188 IPR013083 -
Ssu4g0777 209 Pfam Ring finger domain 142 184 IPR001841 -
Ssu4g0777 209 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 39 206 IPR045899 -
Ssu4g0777 209 SUPERFAMILY RING/U-box 122 189 - -
Ssu4g0777 209 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Ssu4g0777 209 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 39 206 - -
Ssu4g0777 209 SMART ring_2 142 183 IPR001841 -
Ssu4g0777 209 CDD RING-H2_PA-TM-RING 141 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0777 Ssu-Chr4 11966532 11967311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0777 48 204 C3H Transcription Factor Family AT2G35910 64.780 3.17e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0777 - - gmx:100811799 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0777 4 11966532 11967311 Ssu7g2662 7 53268936 53269436 PCT