Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0765 ATGGGAAACAATTGCGTCGGATCGAAAACCTCGAATGATGCAGTACTATTTCCCTATGCTCTTCCGAGTTCATTCTGGTGGCATCATCAAACGAGGGTCACAGAAATTTCTGATGCACCTTCACTTGTGAGTAAAATTCAAGACACAAACGCTATAGAGAATGTTCAAGAAAAGCCCCCACATGTAGTGAAAATTCCACCCAACAAACACGACAGAGAGACTAATACCCCTTCAGAGGAACAAATAAGGCACGTGCCAAGAATGCCTCACAAAGTTAAGAGGCTAGCAATAGCAGCAAAAGGGCTTCAAGCAGAGtcaattttgaagagaaaaagtgGTCATCTTAAAGAGTACTACAATTTGGGACAAGAGCTCGGGAAGGGACAATATGGAACAACATTCCTTTGCACGGAGAAAGCCACTGGGAAAAAGTACGCATGCAAGTCCATTCCGAAGGTGAAATTGGTTGTAGATGAAGACGTGGAGGATGTGAGGAGGGAGATTGAGATAATGAATCACTTGGAGGGGTGTCCCAATGTGATTTCCATCAAAGGGGCTTATGAGGATGGTGTTGCGGTTCATGTTGTGATGGACTTATGTGGAGGGGGTGAACTGTTTGATAGAATTGTGGAAAAGGGGCATTACACGGAGAGAAAGGCAGCTAAACTTGCAAAGACTATTGTTAGTGTTGTAGAGGGTTGTCACTCCCTTGGAGTGATGCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGGAGTGAAGAGTCCACCCTTAAGGCCATAGATTTTGGAATGTCTGTTTTCTTCAAACCAGGAGACATTTTTAGGGACGTGGTTGGAAGTCCTTTTTACATCGCACCTGAAGTTCTACGTAGGCATTATGGTCCAGAAGCTGATGTCTGGAGTGCAGGTGTGATCATATATATTCTCTTATGCGGAACGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATCTTTGAGGAAATTATGCACGGTGATCTTGATTTCTCTTCAGATCCTTGGCCGAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATAACAGCCCATGAAGTTCTTTGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCGGACAAGCCTCTTGATTCTGGAGTTTTGAGTCGTCTGAAGCAGTTTTCTGTATTGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTCTGAATTGAAAGTTATGTTTAAGATGATAGACACAGACAACAGTGGTcaaattactttagaaaaacTCAAGGTTGGATTGAAAATGCTTGGTGCTACTCTCAGTGAACCTGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAGAGAAGATCATTTAGTTGCagctttttcatattttgatagAAGTGGAAGTGGCTACATCACTCAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCATGGAGAATGTGTGCTTGGAGGAAATGATCCGAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGGTAAAAACGGTTTAAAGGGAGGCACTGATTTTAGCATTGGATTTAGGGAGGCACTATCAGTGTGTTAA 1755 0.4108 MGNNCVGSKTSNDAVLFPYALPSSFWWHHQTRVTEISDAPSLVSKIQDTNAIENVQEKPPHVVKIPPNKHDRETNTPSEEQIRHVPRMPHKVKRLAIAAKGLQAESILKRKSGHLKEYYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLVVDEDVEDVRREIEIMNHLEGCPNVISIKGAYEDGVAVHVVMDLCGGGELFDRIVEKGHYTERKAAKLAKTIVSVVEGCHSLGVMHRDLKPENFLFVDGSEESTLKAIDFGMSVFFKPGDIFRDVVGSPFYIAPEVLRRHYGPEADVWSAGVIIYILLCGTPPFWGESEQEIFEEIMHGDLDFSSDPWPNISESAKDLVRKMLVRDPRKRITAHEVLCHPWIQVDGVAPDKPLDSGVLSRLKQFSVLNKLKKMALRVIAENLSEEEISELKVMFKMIDTDNSGQITLEKLKVGLKMLGATLSEPEILDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFSYFDRSGSGYITQDELQKACEEFGMENVCLEEMIREADQNNDGRIDYNEFVAMMQRGNADLGKNGLKGGTDFSIGFREALSVC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0765 584 CDD STKc_CAMK 119 376 - -
Ssu4g0765 584 Gene3D Phosphorylase Kinase; domain 1 97 194 - -
Ssu4g0765 584 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Ssu4g0765 584 CDD EFh 424 484 IPR002048 GO:0005509
Ssu4g0765 584 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Ssu4g0765 584 Gene3D Transferase(Phosphotransferase) domain 1 195 385 - -
Ssu4g0765 584 Gene3D - 386 560 - -
Ssu4g0765 584 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Ssu4g0765 584 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Ssu4g0765 584 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 563 - -
Ssu4g0765 584 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 36 563 - -
Ssu4g0765 584 SUPERFAMILY Protein kinase-like (PK-like) 117 378 IPR011009 -
Ssu4g0765 584 CDD EFh 496 556 IPR002048 GO:0005509
Ssu4g0765 584 Pfam EF-hand domain pair 496 556 IPR002048 GO:0005509
Ssu4g0765 584 Pfam EF-hand domain pair 424 485 IPR002048 GO:0005509
Ssu4g0765 584 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Ssu4g0765 584 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Ssu4g0765 584 SMART serkin_6 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0765 584 SMART efh_1 496 524 IPR002048 GO:0005509
Ssu4g0765 584 SMART efh_1 460 488 IPR002048 GO:0005509
Ssu4g0765 584 SMART efh_1 424 452 IPR002048 GO:0005509
Ssu4g0765 584 SMART efh_1 530 558 IPR002048 GO:0005509
Ssu4g0765 584 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Ssu4g0765 584 SUPERFAMILY EF-hand 406 557 IPR011992 -
Ssu4g0765 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Ssu4g0765 584 Pfam Protein kinase domain 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0765 584 ProSiteProfiles EF-hand calcium-binding domain profile. 531 561 IPR002048 GO:0005509
Ssu4g0765 584 ProSiteProfiles Protein kinase domain profile. 119 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0765 Ssu-Chr4 11829762 11834155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0765 1 578 EF-hand Containing Proteins AT5G04870 61.812 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu4g0765 Pkinase 6.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0765 K13412 - gmx:100814475 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0765 4 11829762 11834155 Ssu7g2688 7 53965320 53971648 PCT
Ssu7g2675 7 53723743 53728122 Ssu4g0765 4 11829762 11834155 PCT