Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0758 ATGAGGTTAGCAGCGGCGTGGCTCTTAGCCGAGCTTCCAGCGCCAGCTTGGGCCTCTCATTCTCCTTCACTGGCTTCACTCTCCCTCCTGATGAAATCGCCGATTCCAAACCATTCAGCGACGACGATATCCTTCACAGATGTGACCTACAAGGTAGTCATTAAAGGCATGACTACAACTAAGGAGAAGGATATCTTGAAGGGGATCACCGGTTCTGTAAATCCAGGGGAAGTTTTGGCATTGATGGGTCCTTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTAGGAGGAAGGTTAATTCAGTCCACAATTGGTCGCTGTATCACTTACAATGATCAACCTTATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGATGATGTTCTGTTTGCTCACCTTACTGTAAAGGAAACATTGACATATGCAGCCCGCCTAAGATTGCCAAATACATTAAcgaaagaggaaaaggaaaaacgAGCTTTAGATGTCATCGAAGAGCTGGGATTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTATGTTCGTGGAATATCAGGTGGAGAGAGGAAGAGAGTTTGTATTGGTAATGAGATCATAATCAACCCTTCTCTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCCTTAAGGATAGTTCAGATGCTACAAGACATAGCAGAGGCCGGTAAAACCGTAGTGACAACAATCCATCAACCATCAAGCAGACTCTTTCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGCTTGCTTTACTTTGGAAATGCATCTGAAGCAATGAACTATTTTCAGTTTATAGGGTGTACACCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAATGTAAATGATATTTCTGTACCATCAGAGTTAAAGGATAAAGTGCAAGTGGGAAATGCTGAAGCTGAAACATGCAATGGGAAACCATCAGCTTCAGTTGTACAAGAGTATCTGGTGGAGGCATATGAGACTCGAGTTGCGAAGACAGAGAAGACAAAGTTAATGGTTCCTGTCCCCCTTGATGAAGAACTAAAGTCTAAAGTTTGTTCTTGTAAGAGACAGTGGGGAGCAAGTTGGTTTGAGCAATTTTCCATATTGTTTTCAAGAGGATTCAAAGAACGGAAGCATGACTACTTTAGCTGGTTGAGAGTCACCCAAGTGCTTTCCACTGCAGTCATCTTAGGATTACTTTGGTGGCAATCAGATGCTAATAACCCAAAAGATTTGCAAGACCAGGCAGGACTGCTTTTCTTTATTGCTGTGTTTTGGGGATTCTTTCCTGTCTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACCAAGGAACGAACAACGGATATGTACAGACTAAGTGCATATTTCATGGCTAGAACTACAAGTGATCTTCTACTAGACTTGGTATTACCAGTGTTATTCCTCCTCGTTGTTTATTTCATGGCCAGTTTGAGACTGAGTGCAGGGCCTTTTTTCCTTAGTATTCTTACAGTTTTTCTCTGCATCACAGCAGCTCAGGGACTTGGACTTGCTATTGGGGCTACACTAATGGACTTGAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGTTTTTTTGTGaagAAAGTCCCCATATTTATCTCTTGGATTCGCTACATATCTTTCAACTACCACACGTATAAACTTTTGCTCAAGGTTCAATATGAACACATTACACCTACCATAAATGGGATCAGAATTGACAGTGGATTCACAGAGGTTGTTGCCCTGATAGCCATGGTTTTTGGTTACCGTTTATTGGCATATTTTTCTTTGCGGCAGATGAAACTTCAAGCTGGAACTTAA 1920 0.4146 MRLAAAWLLAELPAPAWASHSPSLASLSLLMKSPIPNHSATTISFTDVTYKVVIKGMTTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQSTIGRCITYNDQPYSKFLKSRIGFVTQDDVLFAHLTVKETLTYAARLRLPNTLTKEEKEKRALDVIEELGLERCQDTMIGGSYVRGISGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGNASEAMNYFQFIGCTPLIAMNPAEFLLDLANGNVNDISVPSELKDKVQVGNAEAETCNGKPSASVVQEYLVEAYETRVAKTEKTKLMVPVPLDEELKSKVCSCKRQWGASWFEQFSILFSRGFKERKHDYFSWLRVTQVLSTAVILGLLWWQSDANNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFMARTTSDLLLDLVLPVLFLLVVYFMASLRLSAGPFFLSILTVFLCITAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPTINGIRIDSGFTEVVALIAMVFGYRLLAYFSLRQMKLQAGT 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0758 639 Gene3D - 41 283 IPR027417 -
Ssu4g0758 639 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 43 633 - -
Ssu4g0758 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 283 IPR027417 -
Ssu4g0758 639 Pfam ABC transporter 66 217 IPR003439 GO:0005524
Ssu4g0758 639 ProSitePatterns ABC transporters family signature. 189 203 IPR017871 GO:0005524
Ssu4g0758 639 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 43 633 - -
Ssu4g0758 639 SMART AAA_5 75 266 IPR003593 -
Ssu4g0758 639 CDD ABCG_EPDR 42 271 - -
Ssu4g0758 639 Pfam ABC-2 type transporter 384 593 IPR013525 GO:0016020|GO:0140359
Ssu4g0758 639 Pfam ABC-2 type transporter 246 307 IPR043926 GO:0140359
Ssu4g0758 639 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 289 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0758 Ssu-Chr4 11700959 11709369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0758 32 318 Calmodulin-binding Proteins AT2G36910 26.689 3.42e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0758 K05681 - gmx:100796008 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0758 4 11700959 11709369 Ssu4g0758 4 11700959 11709369 ECH
Ssu4g0758 4 11700959 11709369 Ssu7g2684 7 53926224 53936861 PCT