Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0754 ATGCGGAGCTTgaggatgaaaaacttgttgtccCGTGtcaaaagaagaacaaagaaaaacatCAGAGACAGAAACACACGAAACTGCATTTCGGTAGCAAGAGAGTTGGCACGTGTCGCGGAGCAAGAAGAAGTTACTGAGGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACCCACGGCGTTCAGCCCTTGGGAAATCTCTATCTGAACCCAGCTTCCACCAACTCCAGAGACACAGGTTTAGGTAACCTCCATACCCTTTCGGACGAGCTTGTTCTTGACATTCTCGGGTTTTTGGATGCTTCCTGCTTAGGGGTTTTGGCCACTGCGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAGGAATCTCGTGTTGGAGAATCTTCTCGGTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACTTATGTTTCTGCTTGTTACCCTTCGTTTGATAACTCCACTAATGCTCTTGGGGGTTTCAAAGTTAGGGACTTTTATTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAATCTCGAAATGAAGCCTGAGTGGCTGGAGAGGGATAATGTGGCTCGGAAGAGGGGAATTTCGGTTGAGGAGTTTGTGTTGAATTTCGAGGAGCCTAATGAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGCGTTGAGAAATTGGGATAGGGATTACTTGGTGCGGTTGTGTGGTGATGTTAAGTTTTCGGTTGGGGCAGTGGAGATGAAGCTTGGAGACTATTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGACCTTTGTATTTGTTTGATCCTAAGTTTGCTGAAAAGGTTCCAAAATTGGGTGATGAATATGATGTGCCAGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCGGACCACAGGTGGATTATCATTGGACCGGCTGGGTCTGGATCTTCTTTCCATGTCGACCCAAATTCGACTTCGGCTTGGAATGCGGTGATCAAGGGGTCCAAGAAATGGGTGTTGTTTCCTCCCAACGTGATTCCGCCCGGCGTTCATCCTAGTCTTGATGGGGCGGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAAcgaaaaattggaaaaagaaaCCAATTGAGTGCATATGTAAAGCCGGAGAGGTGATCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAATGTCTTGGATTTTCTTAAAAGGCCAAATGCCAGCATACTTGTATCAGGAACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATTGAGGCTTTTTTCCCTGGAGAAATTGATGAATTGACtcgaagagaagaagaaaaaaagatccAGCAGAGGAAACTTTCCTTTTGGGATTCTGTCGCAGATGCTAACGCGGGAGCTTTCAAGTTCTCTTTCTAG 1524 0.4337 MRSLRMKNLLSRVKRRTKKNIRDRNTRNCISVARELARVAEQEEVTEEGFSIKSSAPSHTHGVQPLGNLYLNPASTNSRDTGLGNLHTLSDELVLDILGFLDASCLGVLATASKSFYVFTNHEPLWRNLVLENLLGGFQYKGSWKSTYVSACYPSFDNSTNALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVARKRGISVEEFVLNFEEPNEPVLLEGCIDNWGALRNWDRDYLVRLCGDVKFSVGAVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYDVPVYFREDLFGVLGNERPDHRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPNVIPPGVHPSLDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLVNVLDFLKRPNASILVSGTRDRVNLYDKFKNAIEAFFPGEIDELTRREEEKKIQQRKLSFWDSVADANAGAFKFSF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0754 507 SUPERFAMILY Clavaminate synthase-like 196 440 - -
Ssu4g0754 507 SUPERFAMILY F-box domain 81 151 IPR036047 GO:0005515
Ssu4g0754 507 SMART cupin_9 273 442 IPR003347 -
Ssu4g0754 507 Gene3D - 76 154 - -
Ssu4g0754 507 Pfam Cupin-like domain 207 425 IPR041667 -
Ssu4g0754 507 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 52 505 - -
Ssu4g0754 507 Gene3D Cupin 177 427 - -
Ssu4g0754 507 ProSiteProfiles JmjC domain profile. 282 442 IPR003347 -
Ssu4g0754 507 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 52 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0754 Ssu-Chr4 11645339 11647938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0754 77 431 Glycosyltransferase AT1G78280 38.462 6.71e-76 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu4g0754 Cupin_8 4.1e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0754 - - gmx:100782241 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0754 4 11645339 11647938 Ssu4g0754 4 11645339 11647938 ECH