Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0738 ATGGCTTCAAGATTCTGGACTCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGACGAGGAGGTTGAAACAGCGGTGGGTGAATCTGCGAGTCAAGCTGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGATTCCGATGGCCAAAAGCGTGTTGTGAGGTCCGCGAAAGATAAGCGATTCGAGGAGATGGCTTCGACTGTGGATCAAATGAAGAATGCTATGAAGATTAATGACTGGGTGAGCTTGCAGGAGAGCTTCGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCGGAGAAGGTCCCGAATCTCTACATCAAGGCACTTGTGATGCTGGAAGATTTCTTGGCTCAGGCTTTGGCTAACAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCTAAGGCCTTGAACTCCATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGAGTTGATTAATAAGTGCAGGGAGAATCCCGAGAGTGAGGAGgaaaaggaagaggaggagAGTGAGGAAGAGTATGAGAGTGATGAGATTATTGAGCCGGAGCAGCTTCGAAAACCTGAGGCGAAATCTGATTCCGAAGCCTCTCAGTATGATGATGAAAAGCCAGATGCTGGTGATGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACCGGCTTTTGGATAGACAGTTCATGAAAGACCCTAGTGAGATCACATGGGACACAGTTAACAAGAAGTTCAAAGAGGTTGTGGCTGCTAGGGGCAGGAAGGGCACTGGGAGATTTGAACAGGTTGAGCAGCTTGCTTTCTTGACGAAGGTTGCTAAGACACCTGCGCAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGGCTCAATGGTCATATGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGTTGGTCATTCTTGATATTCTAGTGCAGTACCCAAACATTGTGGTTGATGATTCAGTGGAGCCAGATGAAAATGAAACTCAGAAAGGGATTGACTATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGGGACTATGTTGAGAGACTCAGGGATGAACCCACGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTCGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCGATGAGAAAATTGACTGAGCTGACTGAAGATGGAGATAATGGAGGGGAGACAAATGAGGAGTCGAAAGGATTTGAGGAATCACGAGTTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTGGCCCGGAAACCAACCTTCCCTGAGAATAGCAGAACCATAATGGATGTATTGGTATCATTGATATACAAGTGCGGAGATGAGCGAACCAAAGCACGTGCAATGCTCTGTGATATATACCACCATGCTCTTCTTGATGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGCCATTTGCAAGATAGTGCTCAGCATATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGGCTGGACTGATTTTGGAAGCACATGGCTGTCTGTCTGAACTGTACTCTGGTGGAAGGGTGAAAGAGCTACTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCGTATCATATGCACATCAATCTTGAGCTCCTGGAGGCAGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCTAATATGGCAGCCAATATTCATGATGCAAAACGCAAGGTTATCAGTAAGAATTTCCGTCGCTTGCTCGAACTCAGTGAGAAACAAACATTCACTGGTCCACCAGAAAATGTCAGAGATCATGTTATGGCTGCGACAAGGGTTCTTAGCAAGGGAGACTGCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTatggaaatttgtgagaaatcGAGACACTGTGCTTGAAATGCTGAAGGACAAAATCAAAGAGGAGGCATTGAGGACGTACCTCTTTACCTTCTGTTCATCTTATGAATCCTTGAGCTTGGATCagcttacaaaattttttgacCTCTCTGTTTCTCGCACCCATAGCATCGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCTAGCTGGGACCAGCCAACAGGGTGCATTGTTTTCCAAGATGTTGAACACTCTAGGCTGCAGGCATTGGCATTCCAATTGACGGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCAACAGAGGCAAGGATAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCTGCTGCTGCTGCCGCTGGTAGTGGAACAGCCTCTTCAGGTGGTAGGTGGCAAGACCTGTCCCATTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGgtatggtagtggtggtggaagGCCAATGGCATTAGGCCAAGCAGGTGGGAGTGGCTATTCAAGAGATCGAACGGGACGAGGAACAGGCTATCAGAGTGCACGATATCAAGATGGTTCATATGGAGGTTCAGGGAGGACTACCCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGTGTCCGGGCTTaa 2829 0.4532 MASRFWTQGGSDSEEEESDYDEEVETAVGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEEYESDEIIEPEQLRKPEAKSDSEASQYDDEKPDAGDGPWDQKLSKKDRLLDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLAFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLVILDILVQYPNIVVDDSVEPDENETQKGIDYNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGDFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGETNEESKGFEESRVPTAFVVTPEVVARKPTFPENSRTIMDVLVSLIYKCGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSAQHMDISTQILFNRAMSQLGLCAFRAGLILEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANIHDAKRKVISKNFRRLLELSEKQTFTGPPENVRDHVMAATRVLSKGDCQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFCSSYESLSLDQLTKFFDLSVSRTHSIVSRMMINEELHASWDQPTGCIVFQDVEHSRLQALAFQLTEKLSILAESNERATEARIGGGGLDLPLRRRDGQDYAAAAAAGSGTASSGGRWQDLSHSQPRQGSGRAGYGSGGGRPMALGQAGGSGYSRDRTGRGTGYQSARYQDGSYGGSGRTTQRGSALRGPQGDVSTRMVSLKGVRA 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0738 942 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 870 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu4g0738 942 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 908 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 848 867 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 134 228 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 193 228 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 12 26 - -
Ssu4g0738 942 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu4g0738 942 SMART PINT_4 720 808 IPR000717 -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 838 942 - -
Ssu4g0738 942 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 908 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ssu4g0738 942 MobiDBLite consensus disorder prediction 155 174 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 135 154 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 45 63 - -
Ssu4g0738 942 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 1 63 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 894 925 - -
Ssu4g0738 942 Coils Coil 144 171 - -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 175 192 - -
Ssu4g0738 942 SUPERFAMILY "Winged helix" DNA-binding domain 715 790 IPR036390 -
Ssu4g0738 942 MobiDBLite consensus disorder prediction 30 44 - -
Ssu4g0738 942 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 - -
Ssu4g0738 942 Pfam PCI domain 659 787 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0738 Ssu-Chr4 11435738 11440418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0738 1 942 Eukaryotic Initiation Factors Gene Family AT3G56150 68.856 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0738 K03252 - gmx:100781967 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0738 4 11435738 11440418 Ssu4g0738 4 11435738 11440418 ECH