Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0734 ATGTGTTCTTTCGAGAATCTgccattttccatttttctccTGCAGTGGTACATCACGCAGACATTGAAGTTGCTCACCTTGGACGAAGGATGTGTGCCCTTAGAAAATACTACGTGGCCGGGTGTGATTGGCCGGAGTGAAGTCCTTCCCTCCACAagtaaattcccaaaaaaatctgaaaaagaaaaagaaaaagggattgTTGGACACCGTGCAAATCAAGCATTTGGCTTGTTATTTCACGCGCCCTTTCTCAATTTGGACCACCTCTTCCTACTCACTCACTGCAACGGCGCCGGAGATTCGTCGCTCTCCTTCTCCACCGCCGTGATGGGCGCCAATTCCATGCTATCCGAGTCCTCTCACGATCTCGACGACCAGATCTCCCAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCCGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTAACACTCCTTGTGGCACTGAAAGTGCGGTATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGTCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTTAGAAAGTATGGTAATGCTAATGTTTGGAAGATCTTTACAgacctttttgatttttttccatTGACTGCATTGGTTGAATCAGAAATATTCTGCTTGCATGGTGGATTGTCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCcagGATATATCTGAACAATTCAATCACACAAACAGCCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCAtGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCTAGGAGAGGAGAACCTGATGTCACTCGTAGAACGCCTGATTACTTCTTATAA 1272 0.4182 MCSFENLPFSIFLLQWYITQTLKLLTLDEGCVPLENTTWPGVIGRSEVLPSTSKFPKKSEKEKEKGIVGHRANQAFGLLFHAPFLNLDHLFLLTHCNGAGDSSLSFSTAVMGANSMLSESSHDLDDQISQLMQCKPLSEQQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0734 423 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 111 423 - -
Ssu4g0734 423 Gene3D - 116 423 IPR029052 -
Ssu4g0734 423 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 111 423 - -
Ssu4g0734 423 Pfam Calcineurin-like phosphoesterase 165 356 IPR004843 GO:0016787
Ssu4g0734 423 SUPERFAMILY Metallo-dependent phosphatases 120 408 IPR029052 -
Ssu4g0734 423 ProSitePatterns Serine/threonine specific protein phosphatases signature. 228 233 IPR006186 GO:0016787
Ssu4g0734 423 CDD MPP_PP2A_PP4_PP6 123 407 - -
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 194 221 IPR006186 GO:0016787
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 347 367 IPR006186 GO:0016787
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 369 385 IPR006186 GO:0016787
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 227 251 IPR006186 GO:0016787
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 262 288 IPR006186 GO:0016787
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787
Ssu4g0734 423 PRINTS Serine/threonine phosphatase family signature 165 192 IPR006186 GO:0016787
Ssu4g0734 423 SMART pp2a_7 137 407 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0734 Ssu-Chr4 11376555 11387226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0734 110 353 Calmodulin-binding Proteins AT5G63870 34.266 5.80e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0734 K04382 - gmx:100775812 652.514