Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0725 ATGGAAATAAATGGGTTTTGGACACttgacaaaagaaaaacaattgcAGAAACTTTGCTAAAAAATGTTGACTTTGAGAACTCGTATCATTGCAACATGAGTTTTAATTCTACGGAAGAACTTGCCAATCATGTTGATAACTGTAACTTTAGATCTATGATCTGCGAAAATGAGGGATGCAATGCCAGATTTTGCACATCTCATTTGAAGAAGCACGATTCAACTTGTCCTTTCAAGATAATTCAATGTGAACAGAAGTGTTCTGATAGTATCATGAGACGGGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGATTGTAAATTGTCCCTTTCATGCTGTGGGTTGCCAGTCAGCTATTGCACAATGTATGATTGAAAAACATCGTTCAGATGACATTCAGTCTCATTTGTGGCACTTGCTTAAAGGCATTCACAAGGAAGCATCTGGGGAAGATCTTAAACGACGGGTGGAGCAAATTGTACAGGCATCATCAAGCAATCGTTTAGCAGAGGCACGAGATGTTAGATCTTTAAACTTCATTGTCAAGGATATTGAAGTTAAGCTAGGACCTTTCAAAGTAAGTGCTGAggataaaaataatgcaaaagctGTTGCTAAGAATGGTGATAAGGAAGATGGTGACACTAATATGAACAACAGTGAACAGAGTATAAAAGCCTCAAATATGGTTAATTCATCAGATGAAGCTGAAGTGAGTGACATGATGAATATGAATAATGTAGAAAATACTACcaagaataaatataatgaacCTAGTCCTGTTGCAAACAAAGGCATTAAAGAAAGGACACAGACTTCAAATATGGAAAACTTATCTGATAAAACTGAAATCAGCATCTTGAATGATAAGAACATAAATGTTGTAGCTAGTGAATTAAAAACCAAAGGCAACGAAGAGAGCACTCAAACAAATatggaaaaattatcaaatgaaGAAGTTGGTGCCACAAATGAGGGTAGTGCAGAGAATAACATCAAATGCAAATCTAATGAAGATAGTAAATTCGAAGATAAGGACAACGAAAAAAGCATACAGAATTCAAGAATGGAAATTAAGGGTGGTGCAGAGAATAATGTTAAGAACAAAGATATTGAAGATGGTGGCTTAAAAAAGAGCATACAAACTCTAGAAGTGTAA 1167 0.3368 MEINGFWTLDKRKTIAETLLKNVDFENSYHCNMSFNSTEELANHVDNCNFRSMICENEGCNARFCTSHLKKHDSTCPFKIIQCEQKCSDSIMRREMDRHCITVCPMKIVNCPFHAVGCQSAIAQCMIEKHRSDDIQSHLWHLLKGIHKEASGEDLKRRVEQIVQASSSNRLAEARDVRSLNFIVKDIEVKLGPFKVSAEDKNNAKAVAKNGDKEDGDTNMNNSEQSIKASNMVNSSDEAEVSDMMNMNNVENTTKNKYNEPSPVANKGIKERTQTSNMENLSDKTEISILNDKNINVVASELKTKGNEESTQTNMEKLSNEEVGATNEGSAENNIKCKSNEDSKFEDKDNEKSIQNSRMEIKGGAENNVKNKDIEDGGLKKSIQTLEV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0725 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 137 IPR013083 -
Ssu4g0725 388 MobiDBLite consensus disorder prediction 253 279 - -
Ssu4g0725 388 MobiDBLite consensus disorder prediction 335 356 - -
Ssu4g0725 388 MobiDBLite consensus disorder prediction 303 334 - -
Ssu4g0725 388 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 1 270 IPR043211 -
Ssu4g0725 388 MobiDBLite consensus disorder prediction 303 388 - -
Ssu4g0725 388 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 1 270 - -
Ssu4g0725 388 Pfam TRAF-type zinc finger 72 130 IPR001293 GO:0008270
Ssu4g0725 388 ProSiteProfiles Zinc finger TRAF-type profile. 67 118 IPR001293 GO:0008270
Ssu4g0725 388 MobiDBLite consensus disorder prediction 365 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0725 Ssu-Chr4 11274485 11277807 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g0725 zf-TRAF 3.3e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0725 - - gmx:100799182 597.045