Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0716 ATGCCGGCTGGTCACGGTTTGAGAGCTCGCACTAGAGACTCCTTCTCTCGTCCCTTCAGGAAGAAGGGTACCATAGCCCTCACCACTTATCTCCGAACCTACCGCATCGGCGACTACGTCGACATCAAGGTTAACGGCGCCGTCCACAAGGGCATGCCGCACAAGTTCTACCACGGCCGCACCGGACGCGTCTGGAACGTTACCAAACGCGCCATTGGCGTCGAGGTCAACAAGCAGGTAGGGAACAGGATTATTAGAAAGAGGATTCATGTCCGTGTGGAGCATGTGATGCCTTCGCGGTGCACTGAGGAGTTCCGTCTGAGGAAGATTAAGAATGACCAACTCAAGGCTGAGGCTAAGGCCAAGGGAGAGGTCATTAGCACCAAGAGACAGCCTGAGGGTCCTAAACCGGTTTCATGGTTGAGGGTGCTACTTTGGAGACAGTTACTCCCATTCCATATGATGTCGTCAATGACCTTAAAGGCGGTTACTAGTTTGTTCTTCATGCTTGTTGGTTTGCGTAGCTTTTTTGTTTGGGATTTAGTTCTTTTTTCATTGGAAGAGCCTTATAATTTATGCACACAATCAGACTCTTTAAGTTTTGTCTTGTTTGATTCTAAATACAAGGATATGTTTCTGTTTTACTCGTTGTCAATGTGTTTTACTGCATTGTTCCTTTTCTTATCGCGTGATTTATTAATGATGCTTTTCATAGCAGAGCATTATACCCATAATCTCACACATGTAAGGAGGTAG 756 0.4656 MPAGHGLRARTRDSFSRPFRKKGTIALTTYLRTYRIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRQPEGPKPVSWLRVLLWRQLLPFHMMSSMTLKAVTSLFFMLVGLRSFFVWDLVLFSLEEPYNLCTQSDSLSFVLFDSKYKDMFLFYSLSMCFTALFLFLSRDLLMMLFIAEHYTHNLTHVRR 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0716 251 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Ssu4g0716 251 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Ssu4g0716 251 Gene3D - 99 145 - -
Ssu4g0716 251 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Ssu4g0716 251 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Ssu4g0716 251 PANTHER 60S RIBOSOMAL PROTEIN L21 1 139 IPR001147 GO:0003735|GO:0005840|GO:0006412
Ssu4g0716 251 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 139 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0716 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 70.175 1.49e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0716 K02889 - gmx:100305629 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0716 4 11151403 11152510 Ssu4g0716 4 11151403 11152510 ECH