Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0710 atggcGGAAGGGAAGGAAGAGAGTAAATCTAGCGAGGAGAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAGCCCGAACTGCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGCTTCCCGAGGGTGTTGCTTCGTGATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAACAAGACGCTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATtagAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCACTTTTTTCCAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCCCATACTGATTCTCAGCACCCATCATTGTTTGGAGCAGTGcctatgggttatgttcctccATATAATGGATATGGTTATCAGGCTACTGGAGGTTATGGGCTCATGCCGTACCGGTTGCCACCAATGCAGAATCAACATGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCCAGTATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCCTGCAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGCTCTGTTTCACCTGGTGGTGGAAATAATAACTCTGCTGCATCTTCAGGAGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGGGCCAacctatttatttatcacataCCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAGCCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTCAAGAGGGATAACAAACAGGGTAAACCATACTGA 1296 0.4344 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVNACHNNKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGAVPMGYVPPYNGYGYQATGGYGLMPYRLPPMQNQHGFHNMMPHMNQGNALRPDLGPSMNPRNYHVPPASYVGSYPAVPGLQHPMAYPAGMISPRPMNTSPGSVSPGGGNNNSAASSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQGKPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0710 431 MobiDBLite consensus disorder prediction 305 343 - -
Ssu4g0710 431 MobiDBLite consensus disorder prediction 309 337 - -
Ssu4g0710 431 PANTHER RNA BINDING PROTEIN 7 418 - -
Ssu4g0710 431 Gene3D - 318 423 IPR012677 -
Ssu4g0710 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Ssu4g0710 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 84 IPR000504 GO:0003723
Ssu4g0710 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Ssu4g0710 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Ssu4g0710 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Ssu4g0710 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Ssu4g0710 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Ssu4g0710 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Ssu4g0710 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Ssu4g0710 431 MobiDBLite consensus disorder prediction 193 208 - -
Ssu4g0710 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Ssu4g0710 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Ssu4g0710 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Ssu4g0710 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Ssu4g0710 431 SUPERFAMILY RNA-binding domain, RBD 9 99 IPR035979 GO:0003676
Ssu4g0710 431 Gene3D - 2 100 IPR012677 -
Ssu4g0710 431 Gene3D - 101 192 IPR012677 -
Ssu4g0710 431 CDD RRM3_CELF1-6 348 420 - -
Ssu4g0710 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Ssu4g0710 431 MobiDBLite consensus disorder prediction 185 209 - -
Ssu4g0710 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Ssu4g0710 431 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 418 - -
Ssu4g0710 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0710 Ssu-Chr4 11083848 11090188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0710 345 421 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 2.42e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0710 K13207 - gmx:100813239 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0710 4 11083848 11090188 Ssu7g2047 7 40652957 40657479 PCT