Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0707 ATGAGGAGGAGGGGGAGAGAGATGGACGCTGCAGGCAGAGAGGGGGTTCGTCGTAACCAAGGCGTGAAAGATGATTTGTATGGTGAACTGTGGCGTGCATGTGCCGGGTCATCCGTTTATGTTCCTCGCGATGGGGAGAAGGTTTTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAGCATCAGCAAGATGGTCACATGGAAATTCCTGTTTATGATTTGCCTTCTAAGATCTTATGCAGGGTTGTGTGTGTTCAGTTAAAGGCCGAAGCTTACACAGATGAGGTTTTTGCTCAAGTTACATTAGTCCCGGAGCCCAAGCAAGATGACTTTAGTTTAGTGGACGAAGACAAGTGTCAGATACCTTGCAGAGCTATTACCTACTCCTTTATTAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGACCTCTGGACATGACTCATCAAACACCAGCACAGGAAATTGTTGCAAAGGACTTGCATGGGTTTGAGTGGCATTTTCGGCACATATATCGtgGTCAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTGAATTCAAAGAAACTTGTTGCTGGAGATTCGTGCATTTTCGTTAGTGGGGAAAATGGAGAACTTTGTGTTGGGATTCGTCGGGCAATGAAACATCACAGCAATGCATCCCCATCCTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCACTGTCTATTACCACCCATGGACGAATCCCTTTGAATTCATTATTCCTCTGCAAAACTATTTGAACTCAACCGTACCCGACTATTCAATTGGAATGAGAGTACAAAAGCCGTTTGAAGCTGAAGAGGCTGTAAGAAGATATGCAGGTACGATAATTGGTAAAGAAGGTATCGATAACATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGgTGCAATGGGATAACATACTAGATGCCTACATGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCAGCCAAGGAGAGGCACGTTCCTGTTCTCCCCGCCCCAAAAAAGGCACATGTACTTAACCAGCGCCCTTTGCATGGATTGAGTGGCTTTGCCATGGATGATGTTGTTCAGAATTCAGCCAAGCCTGCATCTCAGACTCAGAGAGCGGATAAGGACTTGCAAGGTCAAGATTACAATGGTGTATGTTCTCCACAGCCTTTGCAAAGACCACCAACAACAGATGTAATCCGCCCATCTAAGGTTTCGATCCGCGGCTCACGGTTTGGGAAGGAGATTCCGAATCAGCTTCCCTTTCTCATGCGGGAGCCTCTTCATAAATCTCTTGGCAGATCAATGTCATTTACAAATGAAGACTTGTCAATTTCAAGTTCAAATATAAGCTCCATTGGTTCTGATTCCCTGGGATGGCCTTCTTCCGAATCTAGAAATGAAAATGATGTTCCTTTTGGCCAACCTGACAGTTGGAGTAGATACAAGCTTTTTGGGGTTAGCTTAATTGACCGCCAACCGGAGCTCCCTTCACCACAATTTGCTGCTTTAAGCAAGACTTCAAGTCTCCTTTCTAGTCCTCCAATGTGTGTTACCTCAGGGAAAACATGCAAGAAGTGTCGCTCTGTTAATAATCGGAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGACCTCGCACGTTTTCATGGATATGATGAACTCATTGCTGAACTCGACTCCATGTTTGATTTCGGAGGAAGCTTAATCAATGGAAGCAGTGGATGGCATGTGTCCTGCATAGATGATGATGGAGACCTGATGCTCTTAGGGGATTATCCATGGCAGGATTTCCAGTGTATGGTGCAAAAGATGATCATATGTCCAAAGTATGGTATTAACAATCTCAATCCAAGCTCCTCAGCAGATCCTCCAGGCCTTTAG 2031 0.4559 MRRRGREMDAAGREGVRRNQGVKDDLYGELWRACAGSSVYVPRDGEKVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPSKILCRVVCVQLKAEAYTDEVFAQVTLVPEPKQDDFSLVDEDKCQIPCRAITYSFIKILTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDSCIFVSGENGELCVGIRRAMKHHSNASPSSSLISGHSMQLGILASASHAVATGSMFTVYYHPWTNPFEFIIPLQNYLNSTVPDYSIGMRVQKPFEAEEAVRRYAGTIIGKEGIDNIRWPGSEWRCLKVQWDNILDAYMHPERVCPWWIEPLESAKERHVPVLPAPKKAHVLNQRPLHGLSGFAMDDVVQNSAKPASQTQRADKDLQGQDYNGVCSPQPLQRPPTTDVIRPSKVSIRGSRFGKEIPNQLPFLMREPLHKSLGRSMSFTNEDLSISSSNISSIGSDSLGWPSSESRNENDVPFGQPDSWSRYKLFGVSLIDRQPELPSPQFAALSKTSSLLSSPPMCVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLARFHGYDELIAELDSMFDFGGSLINGSSGWHVSCIDDDGDLMLLGDYPWQDFQCMVQKMIICPKYGINNLNPSSSADPPGL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0707 676 CDD B3_DNA 133 234 IPR003340 GO:0003677
Ssu4g0707 676 Gene3D - 132 236 IPR015300 -
Ssu4g0707 676 PANTHER AUXIN RESPONSE FACTOR 14 670 - -
Ssu4g0707 676 SUPERFAMILY CAD & PB1 domains 580 653 - -
Ssu4g0707 676 SMART B3_2 134 236 IPR003340 GO:0003677
Ssu4g0707 676 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Ssu4g0707 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu4g0707 676 MobiDBLite consensus disorder prediction 406 440 - -
Ssu4g0707 676 MobiDBLite consensus disorder prediction 498 517 - -
Ssu4g0707 676 MobiDBLite consensus disorder prediction 406 448 - -
Ssu4g0707 676 Pfam Auxin response factor 262 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu4g0707 676 Gene3D - 573 666 - -
Ssu4g0707 676 ProSiteProfiles PB1 domain profile. 577 660 IPR000270 GO:0005515
Ssu4g0707 676 Gene3D - 299 373 - -
Ssu4g0707 676 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Ssu4g0707 676 SUPERFAMILY DNA-binding pseudobarrel domain 131 264 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0707 Ssu-Chr4 11046705 11058912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0707 570 669 B3 DNA Binding Superfamily AT5G62000 46.000 2.35e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu4g0707 B3 2e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0707 - - gmx:100802387 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0707 4 11046705 11058912 Ssu4g0707 4 11046705 11058912 ECH