Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0696 ATGACTGATGAAGCGCCACAATTAGCGCGACCCTGTGACTACTGTGGCCACTCCACAGCGCTTCTCTACTGCAGAGCCGATTCAGCGAAACTCTGTTTCTCTTGCGACCGCGAGGTTCACTCCACCAACCAGCTCTTCTCGAAGCACACTCGCACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCCACCATACTCTGTTCCACCGAGGCCTCTGTTCTGTGCCAGAACTGCGACTGGGAGAAGCACAACCCTGCGCTCTCTTCGCTTCACGAGCGAGGGCCCATCGAAGGCTTCACTGGCTGCCCTTCCGTCTCCGAACTCTTGTCCATCGTCGGGTTTCGAGATGTCAGCAAAAAAACCCTGCTTTCGCCTCAGGGAAGTGGCGCTGATGGGTTCTTCGGGTCCGAGATCGAAGGGCTTTCGGATTTGTTCGTGTGGGATGCTCCTTCTGTTGTCACGCTCGACGATTTGATTTCTTCTTCTGCTTCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCTCTGCCCAAGAATCGGAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGTGAATTGGCCAAGTCTGAGCCGTTGGACCTTGAACAGTTTGTGCAATCGGGGAACTTGTCCTCGGGTTTTGAACGCGACTTGGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTCCTGACACATCATTGAGAGCTTATACTGAAGAAATTCCAGTTAAACATTCTACTTCTGTTGTTGGCGAAACTCACACCTATGGCGACAATGGAGGGAAACCATCCATTTCTCTTAAGTCTGAAACCCTATCAACTACTCCCAAAGCTGCGGCATGTGACTTAACAAGTCAAGAAAGAGATTCTGCATTATTACGGTACAAGcagaagaagaaaacaagaagATATGACAAGCACATTAGGTATGAATCACGGAAAGTTCGGGCAGAAAGCAGGGTAAGAGTCAAGGGTCGATTTGCCAAGATGGAACAGGAACACTGA 1056 0.4962 MTDEAPQLARPCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTEASVLCQNCDWEKHNPALSSLHERGPIEGFTGCPSVSELLSIVGFRDVSKKTLLSPQGSGADGFFGSEIEGLSDLFVWDAPSVVTLDDLISSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLEQFVQSGNLSSGFERDLEADIFPSHEWHRESSEPMYQVVPPDTSLRAYTEEIPVKHSTSVVGETHTYGDNGGKPSISLKSETLSTTPKAAACDLTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEQEH 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0696 351 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Ssu4g0696 351 ProSiteProfiles Zinc finger B-box type profile. 50 96 IPR000315 GO:0008270
Ssu4g0696 351 CDD Bbox1_BBX-like 11 54 - -
Ssu4g0696 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 8 349 - -
Ssu4g0696 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 8 349 - -
Ssu4g0696 351 SMART bboxneu5 55 96 IPR000315 GO:0008270
Ssu4g0696 351 SMART bboxneu5 7 54 IPR000315 GO:0008270
Ssu4g0696 351 Pfam CCT motif 305 347 IPR010402 GO:0005515
Ssu4g0696 351 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Ssu4g0696 351 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0696 Ssu-Chr4 10881859 10885252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0696 3 320 C2C2-CO-like Transcription Factor Family AT2G47890 41.337 6.67e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ssu4g0696 CCT 1.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0696 - - gmx:100817838 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0696 4 10881859 10885252 Ssu4g0696 4 10881859 10885252 ECH
Ssu4g0696 4 10881859 10885252 Ssu7g2034 7 40462854 40465824 PCT