Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0694 ATGGAGGAACACTCTGCTTCTGCAATTGAGAAGAGAGAGGAGTTTGGGAAGTTGCAGTACggATGCGAACACTATAGGAGACGATGCAGAATTCGAGCACCATGTTGCAATCAGATCTTTCCATGTCGTCACTGCCACAACGAGGCCATGAACTCATCTAGCAACCCCGCGGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGTTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAAATGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGACATGGATAAAGGACAATTCCATTGTGATGAATGTGGCATTTGCAGgGTTGGTGGCGTGATAAGTTCTTTCACTGTAAGAAATGTGGCTCTTGCTATTCAGTGA 420 0.4357 MEEHSASAIEKREEFGKLQYGCEHYRRRCRIRAPCCNQIFPCRHCHNEAMNSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSKCGVNMGEYYCEICKFYDDDMDKGQFHCDECGICRVGGVISSFTVRNVALAIQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0694 139 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 8 131 - -
Ssu4g0694 139 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Ssu4g0694 139 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 8 131 - -
Ssu4g0694 139 SUPERFAMILY CHY zinc finger-like 18 91 IPR037274 GO:0008270
Ssu4g0694 139 SUPERFAMILY Zinc hairpin stack 93 128 IPR037275 -
Ssu4g0694 139 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
Ssu4g0694 139 ProSiteProfiles Zinc finger CTCHY-type profile. 92 139 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0694 Ssu-Chr4 10863744 10865043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0694 20 123 C2H2 Transcription Factor Family AT3G18290 39.252 2.33e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0694 K10144 - gmx:100818374 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0694 4 10863744 10865043 Ssu4g0694 4 10863744 10865043 ECH