Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0681 ATGGTGTCTGATAGAACATCTGTTGCTTTAGCGCAAGCTTTCAAGACAGCTCGAAGATACTCGCCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGAGATTCGCAATCACCTGAGGGTTTACCAAATGATCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAGCAAACATGGTGATAGTAACTCCCTGGGGAAATCAAATGGTGAATTTGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTGTTAATTGCTGCTGCTGACAGTTCAGAAGGTCTGCCTTCAACTATCAGACGTTGTTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCCGGACTCCTCTCTAATACTGATTCAGATGctttagtaaaagaaatagttgGACAGACATCTGGTTACATGCCCAGGGATATGTGTGCTTTAATTGCGGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAGACAAAGAAGGGCCTGATGATGTAGACAGTTCTTTTAGTTCCAAGATGACAGAGGACAACAATCACCAGAAAGTTTCACCTCAGATTCCTGGGAAAGAAGACTTGATGAATGCTTTGGAAcgatcaaagaaaagaaatgcatcAGCATTGGGTACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAGTCAATCCTGGATACTGTTCAGttACCTCTTCTGCATAAAGATCTGTTTTCGTCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAGCCAGATCAGCTCGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCGACATAG 1026 0.4181 MVSDRTSVALAQAFKTARRYSPAILLLRHFDVFRDSQSPEGLPNDQRGNTSEVASVIRKFTEPVSKHGDSNSLGKSNGEFVEKNAEKTSGHQVLLIAAADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLFQSLQSVSGLLSNTDSDALVKEIVGQTSGYMPRDMCALIADAGANLFPRNNAKVDKEGPDDVDSSFSSKMTEDNNHQKVSPQIPGKEDLMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDST 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0681 341 PANTHER AAA-FAMILY ATPASE 292 338 - -
Ssu4g0681 341 PANTHER PEROXISOME ASSEMBLY FACTOR 2 292 338 - -
Ssu4g0681 341 MobiDBLite consensus disorder prediction 181 214 - -
Ssu4g0681 341 Gene3D - 295 339 IPR027417 -
Ssu4g0681 341 Gene3D - 10 121 IPR027417 -
Ssu4g0681 341 PANTHER AAA-FAMILY ATPASE 4 292 - -
Ssu4g0681 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 337 IPR027417 -
Ssu4g0681 341 CDD AAA 276 311 - -
Ssu4g0681 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 191 IPR027417 -
Ssu4g0681 341 MobiDBLite consensus disorder prediction 184 198 - -
Ssu4g0681 341 Gene3D - 221 294 IPR027417 -
Ssu4g0681 341 Gene3D - 122 196 - -
Ssu4g0681 341 Pfam ATPase family associated with various cellular activities (AAA) 293 339 IPR003959 GO:0005524|GO:0016887
Ssu4g0681 341 PANTHER PEROXISOME ASSEMBLY FACTOR 2 4 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0681 Ssu-Chr4 10680410 10707208 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0681 216 337 Calmodulin-binding Proteins AT3G56690 36.364 3.93e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0681 K13339 - gmx:100820183 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2335 7 45926410 45926836 Ssu4g0681 4 10680410 10707208 PCT