Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0678 ATGGATGCGTGGAACGAAGATTTTTCGGAGCTGGAGATTGGAAGTTCCGCGGAATCGTTCCAGAAGTTTTTGGTTTCGCAGAGAGAGCTATTCCACAGCCAGATAGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTTAATCCTCTCTCTCAAGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCTAGGGATTTATTGAATCCAAAGGCTGTAAATTACATGCAATCAGTTTTTTCCATTAAAGATGCTATTAGCAAGAAAGAATTGCGCGAGATCAGTGCTTTATTTGGTGTCACAGTGACACAGGTGCGCGACTTTTTCAATGGTCAACGTTCAAGAGTGAGGAGACTTATTCTGTTGTCTAGGGAGAGGGcattaaattctaattcttgTGAAGAACCTCGTGATGATGAAATAAGCTCTGATCCTGTGAGACCAATAATTCCAGCTCCCTTAAACTCTGCTTGCCAGTCCAATGCTGAAGAAGCATCTTGTTCAAcacaggaagtggttttgtctGACCTAGATGACTCAGATAAACAATTTGTTGAtaacatttttagtttaatGCAAAAAGAGGAGACATTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACGATACAAAATTTTTCAGTATTGTTGTGGTTTTTGACTAGAGGGGGTGGAATGACTTTAGCAACTTGGTTGAGTAATGCAGCTGTTGAAGAGCAAACGAGTGTCCTTCTTGTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCTGTTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTACGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTGTTGTCAAAGTGGAGCAAATTATTAGCAAGGAACCAAGTAATAAAGAAGCCCAATGGTGTCACTTCTAGTCATGGTCATAAAGAGATAATGCTTTCTCAGAGTATTGGTCAATTTGTGGGCTCTGAATCATGGCATTCAAATATTGATGTTCCTGAagacattctctctctctcaaacgaATGTTTGGATAATTTCCGGAAAGTGGGATCTCCACAAGCTATGAAATTGTTGCCTCCCAGCTTGGATGATTCTAATAAAAAGTCCACTCTTGGTGTATCTTCATCTCAATCTAGAGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGCCAAAAATCAGTGAGCAGAAGCTCACAAGTGACGAGAGCAGGGCCTGTAAGTCAAGGCCGTCCCATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCATTATTTATGCAGAATAAGTATGGGAAAACTGGTTCTtcaaaagaaagtaaagaaacaAAGATTGATAGTCTGAATAAACCTCAGACAAACCCAGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCATACTCCACccaaaattgaagaaaacaagaaacCTCTGTTACTTGCCTCTAAAACCACTAATAGGCTGGAAGCTTCTTATTCAAAACCGAAAATGGATGTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTGCAGATCCCATGGAAAATACCAGCAGAAGTGAAACTTAAAGATACCTGGAGAGTTGGTGGTGGTGAAAATAGCAAAGAGGTTGATGTCCAGGAAAACAGAAACCGCAGGGAAAAGGAAAGTATATACAAGACTGTCCAAGAGATGCCATCTAACCCCAAAGAGCCTTGGGACCTTGAAATGGACTACGATGACACTTTGACACCGGAAATTCCCATTGAACAGCTACCAGATGGTGATAGTGCAGAAATAGCAGTTACCCCCCATCAGGTTGCTCCTCATACTGTTCAAGGGGTGGCCTCCACATCTTCAACCAGTATGGCCACTGCTGAGCCTGATTTAGAATTGCTTGCCGTACTGCTAAAAAATCCAGATTTGGTATTTGCCTTAACTTCTGGACAAGCTGGTAGCACACCGAGTGCAGAAACCGTGAAGCTGCTGGACATGATCAAGAGAGGAGGTGTGAACTTGGGtttaagtgaaaatacaaaTGGCAATTATGGCATGAGTGTAAAGGCCCAGGAGAAGGTGGAAGTTTCTCTCCCATCTCCAACTCCTTTAAGCGATCCAAGAACGAGTGGATGGTGCACAGAAGCATCAAAAAATCCCTTTTCACGGCGAAGTGTAGCACCTGAAAGAATCATCCAGAGCCCTGCTGCAGTGGCAACTACCAACTTATTATCTCAGATTCCCGTAGCTGGCACTACAGTAAGGCAACAGCCAACAGTTGTGGTTCCATCTTCGAGGCAGCTCACAAGCACATCAATTTCACCATATTCACTGCCTCAGGCAACTAATGTTATTCCTAAAAAGCCACCACCACTTGTGCATGTACAAACACCATCCACAGACGTAGGTTTAACCATGAAGAAGAACTTAATCACTGCAAATGCATCTTCAGTTAACTTACCTGCCACACATTCAACTCTCGCAATGCGGGGTGATGGCACCAATTATGTAAAACCAGTACCTAATTTGAGTGTACAACATGAGGGTTTGTCTAATTCATTCCCGCAACCCTTCAGGTTACCCTCACCAACGCCATCACATTCAGCCACACAAAAACAAAGACAACAACATGTGATCCAGGAAGCCCATTACACTGAACCTTCCTATCGTACACCTGTCCATTCCTACCAGCCACAAATCGAAAAATCAGATCATGGGTCTGATTTGTGGAGAGTTAGGCAGGATCATGTGTCATCTAGTTATCATTCTCAACGAAATCATAACAACTATAACACATTTGTTGGGGGATCCAGACAATCTGGTTTTTGGGATAGAAATAATCATGCAAGGGAAGAATTTGAATCATGGAGTCCGGAGAATAGTCCAACTAGAAATCCTAGGTATGTACCAGGTAGAAATTACCCAGAGTCCAGAATGAATCATGGAAGGAATCATAGACCTGAATGGTCAAGGCAGAGGAGTTCTTCTGGACACTGGGACCCTGGTAGGCAGGGAAACAGAAGGTGGCATGATCAGAGACGATGA 3072 0.4144 MDAWNEDFSELEIGSSAESFQKFLVSQRELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKELREISALFGVTVTQVRDFFNGQRSRVRRLILLSRERALNSNSCEEPRDDEISSDPVRPIIPAPLNSACQSNAEEASCSTQEVVLSDLDDSDKQFVDNIFSLMQKEETFSGQEKLMEWILTIQNFSVLLWFLTRGGGMTLATWLSNAAVEEQTSVLLVILKVLCHLPLHKAVPMHISAILQSVNKLRFYRTSDISNRARVLLSKWSKLLARNQVIKKPNGVTSSHGHKEIMLSQSIGQFVGSESWHSNIDVPEDILSLSNECLDNFRKVGSPQAMKLLPPSLDDSNKKSTLGVSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGPVSQGRPMSADDIQKAKMRALFMQNKYGKTGSSKESKETKIDSLNKPQTNPASIAACSSKVHTPPKIEENKKPLLLASKTTNRLEASYSKPKMDVKEPLWEKCKRVQIPWKIPAEVKLKDTWRVGGGENSKEVDVQENRNRREKESIYKTVQEMPSNPKEPWDLEMDYDDTLTPEIPIEQLPDGDSAEIAVTPHQVAPHTVQGVASTSSTSMATAEPDLELLAVLLKNPDLVFALTSGQAGSTPSAETVKLLDMIKRGGVNLGLSENTNGNYGMSVKAQEKVEVSLPSPTPLSDPRTSGWCTEASKNPFSRRSVAPERIIQSPAAVATTNLLSQIPVAGTTVRQQPTVVVPSSRQLTSTSISPYSLPQATNVIPKKPPPLVHVQTPSTDVGLTMKKNLITANASSVNLPATHSTLAMRGDGTNYVKPVPNLSVQHEGLSNSFPQPFRLPSPTPSHSATQKQRQQHVIQEAHYTEPSYRTPVHSYQPQIEKSDHGSDLWRVRQDHVSSSYHSQRNHNNYNTFVGGSRQSGFWDRNNHAREEFESWSPENSPTRNPRYVPGRNYPESRMNHGRNHRPEWSRQRSSSGHWDPGRQGNRRWHDQRR 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 405 423 - -
Ssu4g0678 1023 SUPERFAMILY Homeodomain-like 68 133 IPR009057 -
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 446 472 - -
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 987 1002 - -
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 373 431 - -
Ssu4g0678 1023 SMART HOX_1 68 130 IPR001356 GO:0003677
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 379 396 - -
Ssu4g0678 1023 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 961 1023 - -
Ssu4g0678 1023 Gene3D - 66 126 - -
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 856 915 - -
Ssu4g0678 1023 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 1023 - -
Ssu4g0678 1023 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 227 310 IPR035441 -
Ssu4g0678 1023 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 1023 - -
Ssu4g0678 1023 MobiDBLite consensus disorder prediction 856 891 - -
Ssu4g0678 1023 CDD homeodomain 69 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0678 Ssu-Chr4 10620034 10628781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0678 520 734 Homeobox Transcription Factor Family AT4G02560 50.463 3.67e-49 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0678 - - gmx:100780237 1762.66