Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0677 ATGGGTGAAACTTTCTCTACTGCACCTCCAGTTGGCACCAAATACGAGAGAGAATCTGTGTCCATCAAAAAtctgtggaaaaaaaaatctcagacATCCGCTCCAGATTTTGTGATGAAGGAAGTTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGCCAGCAGCAACAGCTACAAAACCAACTTCATGACTCAAGCTCAGGACCATCCAGTGCTTGCAATAGCAATGCCTCCACTAATCAACAACAAACCAAGAAGAAACGAAACCTTCCTGGAACCCCAGGCAAATATTCAACTACCCcaacttcaattttttgtttctgcCCaTCCTAATGCTGAAGTTGTTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGATTTGCAACAAAGGGTTCCAGAGGGACCAAAACCTTCAGTTGCACCGTAGAGGTCACAATCTTCCGTGGAAACTGAGGCAAAGAACAAGCACTGAGGTGAAGAAACGGGTCTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATCAAAAAGCACTATAGCCGCAAACATGGCGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATACGCAGTCCAATCTGACTGGAAGGCCCATCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGCGGAACCATCTTTTCCAGGAGAGATAGTTTTATCACCCATAGAGCTTTCTGTGACGCATTAACTGAAGAAAACAACCGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACTTGCAAAGTCAGATACCGGATCTTATGTCTACCATGCCTCTAAACACTAGTCCCAACACAGCATCCAAATTCGGGGACTATGACCCTAAGAACCCACTAAAATCACTCCCCCAAGAAATTGTCCCAGTACCATTCAAGTCTATGAGCATGGGTGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGTCTCCGTCCTCTTCCAGCCTCCAGCTAGGCTCCAACACCTCATCAAGCTTCAATTACTTGCAAGACAACAAAAACGGAGGACTAATTGCTGGCTCAGCTCAGATGTCCGCAACAGCTTTACTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTAGTGGCACTGCTGGTCCTGATCATGTTTCTTCCACTAGACCACCACCATATTCTGGTGCCATGCTGCAGCATAACCCCTCGTATGACCACTTCTCTCCACAGCCTGATCTGTCTAGTATGGCTGGCATGAGTGGTGGAGGAGCATTTGTCAATCAATTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACAAACACTACCGGGTCTGCAATCAATGATGTAGGAATGTTCAGCCAAATGCCAATGGGAAGTGACCACAACCCAGGATTGATGACGAATGTGGAACAAGAAGTTTGTAATAGTTCGAGTTTGATCCATGGAAGAGATGTAGCAGAAGGTAACCCAATGCACCCATCACGGTTTGGAGGGAGTGACATGACAACGGTTCATGATTTCTTGGGCATTGGTGGTTCAACTTCAAGAGCAGCAAGTTTGCATGAACCGCAGCAACATTTGGAAGCATTAAGCCACCAGAGGTCGGAAGTTATGAATCATTTTCATCCCCATTTTCCACACGATTCAGCTATGGAGGGACCCATGTGGGATGTTTGA 1788 0.448 MGETFSTAPPVGTKYERESVSIKNLWKKKSQTSAPDFVMKEVSPQETMGKKFIKKASSNSYKTNFMTQAQDHPVLAIAMPPLINNKPRRNETFLEPQANIQLPQLQFFVSAHPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNTSPNTASKFGDYDPKNPLKSLPQEIVPVPFKSMSMGGGMFSTNAGALFGGPKSMSPSSSSLQLGSNTSSSFNYLQDNKNGGLIAGSAQMSATALLQKAAQMGATASNSINSPMMQKGFVSGTAGPDHVSSTRPPPYSGAMLQHNPSYDHFSPQPDLSSMAGMSGGGAFVNQLFHKGQEISQVFDTNTTGSAINDVGMFSQMPMGSDHNPGLMTNVEQEVCNSSSLIHGRDVAEGNPMHPSRFGGSDMTTVHDFLGIGGSTSRAASLHEPQQHLEALSHQRSEVMNHFHPHFPHDSAMEGPMWDV 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0677 595 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 153 IPR013087 -
Ssu4g0677 595 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 111 577 - -
Ssu4g0677 595 Gene3D Classic Zinc Finger 186 265 - -
Ssu4g0677 595 SMART c2h2final6 131 153 IPR013087 -
Ssu4g0677 595 SMART c2h2final6 207 227 IPR013087 -
Ssu4g0677 595 SMART c2h2final6 172 202 IPR013087 -
Ssu4g0677 595 SUPERFAMILY beta-beta-alpha zinc fingers 130 228 IPR036236 -
Ssu4g0677 595 ProSitePatterns Zinc finger C2H2 type domain signature. 133 153 IPR013087 -
Ssu4g0677 595 Pfam Zinc finger, C2H2 type 131 153 IPR013087 -
Ssu4g0677 595 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 111 577 - -
Ssu4g0677 595 Gene3D Classic Zinc Finger 110 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0677 Ssu-Chr4 10607890 10614951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0677 113 414 IDZ Gene Family AT3G50700 52.941 2.06e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g0677 zf-C2H2 0.0062 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0677 - - gmx:100782774 837.025