Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0674 ATGAAGGGGAAAAGCAATAGGATTGGAAAGAAGCAGAGTAGGAAGATGAAGGGCACGTTGGGTAGCAGCACCACGAGGCACTTGCAGCTTCAGCTGGGCCAAGTGTCCCTCTTTAACCTCCACCAATCATCTTCTACTTCTTCTTCCGCCGTTTCTCGCTTCCAGAACCTTCTCGATGCCGAAGCTCCCGACGCGTCTTCTTCGCGCGTGCCGGTCACCGACGACGCTGccaccgccgccgccgccgaCGACAGAGACTTCATTCTCAGCCAGGACTTCTTCTGCACTCCGGATTACATAACCCCGGATAATCAGCATATTTTGAACGGCTTTGATTGCAATATGGATAACACGCCTTGCCCCAAATCGCCGGAGAAGCTGAACACTACAAAAAGCAAGAGATGCCGATTGGATGCGATCTCTGTAAACCCTCTCAGCCCTACCTTTTCTAGTGACCATCAACCGGTTGTGGAACTTGGAAAGGACTTTGTTACAGACGAAGTAGCTGTAGAGAGAACAATAGCAGCTGCTAAACCAAAGAATCAAAATTATGTGTCACATTCTGCAGTTGCATTGCGTTGCAGGGTTATGCCTCCTCCTTGCATTAGGAACCCCTATTTGAAAGATGTTTCAGAAAAGGATATAGATCCTTTTGGAAACCAAAGATTGAAATGTGCAGGTCTCTTCCCCGCAATTGCTGGTGGTGATGCGCTTTCACGCTATCGCACTGACTTTCATGAAATTGAGCAAATTGGTAGAGGGAACTTTAGTAGTGTTTTCAAAACACTAAAACGAATAGATGGCTGCTTGTATGCTGTGAAATGCAGCACTAGACAGTTACGTCAGGAAACAGAAAGTATCGAATTTGCTTTCCTTAATTTCATTAACCTTTTTGCCACTTTAGGTTTGCATGAGAACATTGTGGGCTACTATTCTTCATGGTTTGAAAATGAACAGCTGTACATTCAGATGGAGTTATGTGATCACAGCTTATCCATAAGAAAATGCTCCGCGTTATTTACAGAAGGACAAGTGTTAGATGCCTTATTTCAGGTTGCCAATGCACTGCGATTTATACACGAGAAGGGAATAGCTCATCTAGATGTCAAGCCTGATAACATTTATGTCAAAAATGGTGTTTATAAGCTTGGTGATTTTGGATGTGCGACTCTTCTTGATAATAGCCTGCCAATTGAGGAGGGTGACGCACGTTATATGCCCCAGGAAATCCTTAATGAGAATTATGATCACCTTGACAAGGTTGATATCTTCTCCTTGGGAGCTTCTATTTATGAACTAATTCGTAGATTGCCTTTGCCAGAATCAGgatgtcaatttttaaatcttaaagaGGGCAAGTTACCACTTCTGCCTGGTCATTCGTTGCAACTTCAAAACTTGCTCAAGGTCATGATGGACCCTGATCCGATTAAGCGGCCTTCTGCTAAAGAATTGGTAGAGAACCCAATTTTTAATAGGGTCCACAAAACAGCCAGAAGTTGA 1503 0.4271 MKGKSNRIGKKQSRKMKGTLGSSTTRHLQLQLGQVSLFNLHQSSSTSSSAVSRFQNLLDAEAPDASSSRVPVTDDAATAAAADDRDFILSQDFFCTPDYITPDNQHILNGFDCNMDNTPCPKSPEKLNTTKSKRCRLDAISVNPLSPTFSSDHQPVVELGKDFVTDEVAVERTIAAAKPKNQNYVSHSAVALRCRVMPPPCIRNPYLKDVSEKDIDPFGNQRLKCAGLFPAIAGGDALSRYRTDFHEIEQIGRGNFSSVFKTLKRIDGCLYAVKCSTRQLRQETESIEFAFLNFINLFATLGLHENIVGYYSSWFENEQLYIQMELCDHSLSIRKCSALFTEGQVLDALFQVANALRFIHEKGIAHLDVKPDNIYVKNGVYKLGDFGCATLLDNSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGASIYELIRRLPLPESGCQFLNLKEGKLPLLPGHSLQLQNLLKVMMDPDPIKRPSAKELVENPIFNRVHKTARS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0674 500 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 418 495 - -
Ssu4g0674 500 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 54 405 - -
Ssu4g0674 500 Pfam Protein kinase domain 245 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0674 500 ProSitePatterns Protein kinases ATP-binding region signature. 251 274 IPR017441 GO:0005524
Ssu4g0674 500 PANTHER BNAA08G27310D PROTEIN 418 495 - -
Ssu4g0674 500 PANTHER BNAA08G27310D PROTEIN 54 405 - -
Ssu4g0674 500 SMART serkin_6 245 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0674 500 SUPERFAMILY Protein kinase-like (PK-like) 240 496 IPR011009 -
Ssu4g0674 500 Gene3D Phosphorylase Kinase; domain 1 235 325 - -
Ssu4g0674 500 ProSiteProfiles Protein kinase domain profile. 245 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g0674 500 Gene3D Transferase(Phosphotransferase) domain 1 326 496 - -
Ssu4g0674 500 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g0674 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0674 Ssu-Chr4 10586823 10589971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0674 11 494 Core Cell Cycle Gene Families AT1G02970 58.848 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Ssu4g0674 Pkinase 4.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0674 K06632 - gmx:547742 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0674 4 10586823 10589971 Ssu4g0674 4 10586823 10589971 ECH