Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0653 ATGTCCTTCGCATCTTCAACATGGATAACATCCCTCTCATGTGCATCCCCTGTGAAACAAACCTCGGGGGACACGTTAATCTCAACTCTGCTTCAATGGCTGAGGTTTATTTTCCTTTCACCTTGTCCTCAGAGAGCTATATTGTCTTTCGTTGATGTCCTACTCCTGTTGTTTCTTTTCGTGTTTGCTGTCACCAAGCTCTGGAAAAGGTTCAACTCCCATGGCGGTTCCTCCGCCGACCTCAACAAACCGCTCATCAGGAATAACAGATCCATTTTCTTAACAACTATGCGGTTTAAGCTAACCTTAACTGCAGCGGTTGTTTTGACTATACTTTACACTGTTGCTTGCGTTCTTACGTTTAGCAGTGCCTCCAAGGTGCCGTGGAAGCAAGTTGACGAGGTGTTTTGGTTAGTCCAGGCCATAACACATGCGGTGCTTGCAGTCTTAATCATTCACGAGAAAAGATTTGAAGCCGTTGCACACCCTCTATCGGTTCGAGTTTATTGGATTGCAAATTTCTTTGTCATTTCGTTGTTCACTGTTTCTGCGGTTATACGTTTGGTCTCCGTTAGCGTGGATGAAACCAAAGACTTCACGGTGGACGATGTGGTCTCTTTCATTTCACTCCCTCTGTCGTTATTTCTTCTTTTCGTGGCGGTTAAAGGATCCACCGGAATTGTTTTGTCGACGGACGAAACACAACCACTTGTTCACGAGGAAACGAAGTTGTGTGAGAGAGAATCCGAGGTTACTGGCTTTGCTTCGGCTTCTATATTGTCCAAGGCGCTTTGGATTTGGATAAATCCCTTGTTGCGCAAAGGGTACAAGTCCGCGCTGAAGATCGATGAGATTCCAACACTTTCTCCTGAGCATAGAGCTGAGAGAATGTCATctatttttgaatcaaaatggCCTAAATCGAATGAGAGGCCGAAGCATCCGGTTACAATCACTTTGCTTCGGTGCTTTTGGAAGGAGTTAGCCTTCACTGCCTTGCTTGCAATTATTAGGCTGTGTGTCATGTTTGTGGGGCCGGTTCTCATACAAAGTTTTGTTGATTTCACGTCGGGGAAGAGAAGCTCTGCATATGAAGGATACTACCTCGTGTTGATTCTTCTCGTTGCTAAGATCATTGAAGTCTTGACTACTCATCATTTCAACTTCCAATCTCAGAAGCTTGGGATGCTTATACGGTGCACTATTATCCCTTCTTTGTATAGAAAAGGGCTAATGCTTTCGTTCTCTGCTCGGCAGGATCATGGGCTAGGAACCATTGTGAATTACATGGCTGTTGACACCCAGCAACTCTCTGACATGATGCTTCAGTTACACGCTGTGTGGATGATGCCACTTCAAGTTGCCATTGGCTTGTTTCTGCTTTACAATTGTCTAGGTGCCTCAGCAGTGACAGCGTTTCTTGGCCTTCttggtgtttttgtgtttgCCGTGTTTGGTACCCGTAGGAACAACCGCTTCCAATATAATGTGATGACGAACCGTGACTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGTGTGATCAAGTTTCAGGCCTGGGAGGAACACTTCAACGAGAGAATTATGGGTTTTCGCGAGACGGAGTTTGGGTGGCTTTCCAAGTTGATGTTCTCAATTTGTGGCAATATTGTTGTGATGTGGAGCACGCCGTTGTTGGTTTCAACCCTCACGTTTGGTACGGCTATTCTGCTGGGAGTTCAACTGGATGCGGCCACGGTCTTCACCACAACATCTGTCTTCAAGATCTTGCAGGAGCCAATTAGGACATTCCCACAGTCTATGATATCTCTTTCACAAGCAATGATATCACTGGAGAGGTTAGATAGGTTCATGTGGAGCAGGGAATTGTCGAATGATTCAGTTGAGAGAGAGGAAGGCTGTGGTGGACAAACAGCAGTGGAAATCATAGATGGGACTTTTAGTTGGGAAGATGATAACATGCAACAGGACttgaaaaacattaatttcGAGATCAAAAAGGGGGAGCTTACAGCAATTGTTGGGACTGTAGGGTCAGGAAGTCCTCTCTTCTTGCATCGATTCTCGGAGAGATGCGCAAGGTTTCTGGAAAGACAGAGGTACAATGAAGTTATCAGGGTGTGTTGTTTGGAGAAAGATTTGGAAATGATGGATTATGGGCATCAGACAGAAATTGGAGAGCGTGGTATCAACCTGAGTGGGGGCCAGAAGCAGCGTATACAACTTGCAAGGGCCGTGTATCAAGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCTCATACTGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGCAAGACCACTATTCTTGTAACACACCAAGTAGATTTCCTACATAATGTTGATCTTATATTAGTGATGAGGGACGGTATGATAGTCCAATCAGGGAAGTACGATGATCTATTAGATTCTGGAATGGATTTTAAAGATCTGGTAGTTGCACATGAGACCTCCATGGAACTAGTAGAGCAGGGTGTGGTCATACCTGGTGAAAATTTAAGTAGACCAGCGAAATCTCCAGAGGCAACTTCTATTTACAAGGGAACCAATGGTGAAAGCAAATCTCTTGACCAGCCCGAGTCTAGCAAGAAAAGTTCTAAACTCATCaaagaagaggagagagaaactgGCAAAGTGAGCTTACATATCTATAAACTGTACCTCACCGAGGCTTTTGGGTGGTGGGGCATTACAGTAGTATTGGTTCTTTCTTTGTTATGGCAAGCGTCTTTGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAGAACGTGCTAAAATGTTTAACCCTTTTCTATTCATGTCCATCTATGCAATTATTACTGTTGTTTCGGTTATTTTGGTAGTGACAAGATCCTACTTCTTTACACTCTTGGGGCTAAAGACAGCACAAATTTTCTTCACACAAATTCTTCGTAGCATCTTGCATGCTCCCATGTCTTTCTTTGACACTACGCCATCTGGGAGAATTCTAAGTAGGGCATCCACTGACCAGACCAATGTTGATGTCCTTATCCCCTTGCTCACTGGAATTGTTATTGCCATGTACATTACAGTGCTGAGTATCTTCATCATCACCTGTCAAAATGCTTGGCCAACAGTGTTTTTGATAATTCCTCTTGTTTGGTTGAATATATGGTACCGGGGTTACTATCTTGCATCATCTCGTGAGTTAACTCGCCTGGATTCAATTACCAAAGCACCAGTTATTCATCACTTCTCTGAAAGCATAGCAGGGGTCATGACAATCCGCGCATTCagaaagcaaaagaaattttgtgaagaaaatCTCAAACGGGTGAATGCTAATTTGCGAATGGATTTCCACAACTATAGTTCTAATGAGTGGTTGGGAGTACGCTTAGAATTGCTTGGAAGCTTTGTCTGTTGCATTTCTGCCATGTTCATGATCATCTTACCCAGCAGTATCATAAAGCCAGAAAATGTTggtttatctctctcttatggCTTGTCCTTAAATAGTGTGTTGTTCTGGGCTGTATACATGAGCTGTTTCATCGAAAACAAAATGGTGTCTGTTGAGAGGATAAAGCAGTTCACAAATATTCCATCGGAACCAGCATGGAATATCCAGGATCATTTGCCTCCTTCAAATTGGCCAGGTCAAGGCAATGTAGATATCAAAGATTTGCAGGTCAGATATCGTCCAAACACTCCTCTTGTTCTTAAAGGCATTACTTTAAGCATTAGTGGAGGTGAAAAGGAGCCCGTCCTTTTTGAAGGAACTGTCAGAAGCAACATTGATCCAATTGGACAGTATACAGATGAAGAAATATGGAAGAGCTTGGAACGCTGTCAACTAAAAGAGGTTGTTGCTGCTAAGCCTGAAAAACTAGACTCTTTAGTGGTGGATAATGGAGAGAATTGGAGTGTGGGGCAGAGACAGTTGCTTTGTCTAGGGCGGGTTATGCTTAAGCGAAGTCGGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACCGATGGTGTTATTCAGAAGATCATTAGAGAGGACTTTGCAGCCTGTACCATAATCAGCATTGCTCATAGAATACCCACAGTCATGGACTGTGACAGAGTTTTAGTTGTAGATACAGGGCGAGCGAAAGAATATGATAAGCCCTCCAACTTGCTTCAGAGGCAATCTCTCTTTGGGGCATTAGTTCAAGAGTATGCCAACCGCTCCACTGGACTATGA 4269 0.4256 MSFASSTWITSLSCASPVKQTSGDTLISTLLQWLRFIFLSPCPQRAILSFVDVLLLLFLFVFAVTKLWKRFNSHGGSSADLNKPLIRNNRSIFLTTMRFKLTLTAAVVLTILYTVACVLTFSSASKVPWKQVDEVFWLVQAITHAVLAVLIIHEKRFEAVAHPLSVRVYWIANFFVISLFTVSAVIRLVSVSVDETKDFTVDDVVSFISLPLSLFLLFVAVKGSTGIVLSTDETQPLVHEETKLCERESEVTGFASASILSKALWIWINPLLRKGYKSALKIDEIPTLSPEHRAERMSSIFESKWPKSNERPKHPVTITLLRCFWKELAFTALLAIIRLCVMFVGPVLIQSFVDFTSGKRSSAYEGYYLVLILLVAKIIEVLTTHHFNFQSQKLGMLIRCTIIPSLYRKGLMLSFSARQDHGLGTIVNYMAVDTQQLSDMMLQLHAVWMMPLQVAIGLFLLYNCLGASAVTAFLGLLGVFVFAVFGTRRNNRFQYNVMTNRDSRMKAVNEMLNYMRVIKFQAWEEHFNERIMGFRETEFGWLSKLMFSICGNIVVMWSTPLLVSTLTFGTAILLGVQLDAATVFTTTSVFKILQEPIRTFPQSMISLSQAMISLERLDRFMWSRELSNDSVEREEGCGGQTAVEIIDGTFSWEDDNMQQDLKNINFEIKKGELTAIVGTVGSGSPLFLHRFSERCARFLERQRYNEVIRVCCLEKDLEMMDYGHQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTTILVTHQVDFLHNVDLILVMRDGMIVQSGKYDDLLDSGMDFKDLVVAHETSMELVEQGVVIPGENLSRPAKSPEATSIYKGTNGESKSLDQPESSKKSSKLIKEEERETGKVSLHIYKLYLTEAFGWWGITVVLVLSLLWQASLMASDYWLAYETSEERAKMFNPFLFMSIYAIITVVSVILVVTRSYFFTLLGLKTAQIFFTQILRSILHAPMSFFDTTPSGRILSRASTDQTNVDVLIPLLTGIVIAMYITVLSIFIITCQNAWPTVFLIIPLVWLNIWYRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFRKQKKFCEENLKRVNANLRMDFHNYSSNEWLGVRLELLGSFVCCISAMFMIILPSSIIKPENVGLSLSYGLSLNSVLFWAVYMSCFIENKMVSVERIKQFTNIPSEPAWNIQDHLPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLSISGGEKEPVLFEGTVRSNIDPIGQYTDEEIWKSLERCQLKEVVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFMDEATASVDSQTDGVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVVDTGRAKEYDKPSNLLQRQSLFGALVQEYANRSTGL 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0653 1422 Pfam ABC transporter transmembrane region 953 1169 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0653 1422 Pfam ABC transporter transmembrane region 330 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0653 1422 Pfam ABC transporter 1258 1345 IPR003439 GO:0005524
Ssu4g0653 1422 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 699 1262 - -
Ssu4g0653 1422 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 699 1262 - -
Ssu4g0653 1422 Gene3D - 1261 1413 IPR027417 -
Ssu4g0653 1422 SMART AAA_5 670 818 IPR003593 -
Ssu4g0653 1422 CDD ABC_6TM_ABCC_D1 330 617 IPR044746 GO:0140359
Ssu4g0653 1422 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1178 1414 IPR003439 GO:0005524
Ssu4g0653 1422 Coils Coil 1104 1124 - -
Ssu4g0653 1422 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 643 833 IPR003439 GO:0005524
Ssu4g0653 1422 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 93 684 - -
Ssu4g0653 1422 CDD ABCC_MRP_domain2 1231 1398 - -
Ssu4g0653 1422 Pfam ABC transporter 724 761 IPR003439 GO:0005524
Ssu4g0653 1422 CDD ABCC_MRP_domain1 643 809 - -
Ssu4g0653 1422 Gene3D ABC transporter type 1, transmembrane domain 879 1214 IPR036640 GO:0005524|GO:0016021
Ssu4g0653 1422 Gene3D ABC transporter type 1, transmembrane domain 302 625 IPR036640 GO:0005524|GO:0016021
Ssu4g0653 1422 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1263 1421 - -
Ssu4g0653 1422 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 93 684 - -
Ssu4g0653 1422 SUPERFAMILY ABC transporter transmembrane region 317 621 IPR036640 GO:0005524|GO:0016021
Ssu4g0653 1422 MobiDBLite consensus disorder prediction 856 875 - -
Ssu4g0653 1422 ProSitePatterns ABC transporters family signature. 735 749 IPR017871 GO:0005524
Ssu4g0653 1422 Gene3D - 639 690 IPR027417 -
Ssu4g0653 1422 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 609 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0653 1422 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g0653 1422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 831 IPR027417 -
Ssu4g0653 1422 CDD ABC_6TM_ABCC_D2 916 1208 IPR044726 GO:0140359
Ssu4g0653 1422 Gene3D - 691 845 IPR027417 -
Ssu4g0653 1422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1413 IPR027417 -
Ssu4g0653 1422 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 1263 1421 - -
Ssu4g0653 1422 MobiDBLite consensus disorder prediction 851 888 - -
Ssu4g0653 1422 SUPERFAMILY ABC transporter transmembrane region 904 1213 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0653 Ssu-Chr4 10313837 10353090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0653 636 826 Calmodulin-binding Proteins AT2G36910 31.980 9.49e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0653 - K05666 gmx:100808752 2353.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0653 4 10313837 10353090 Ssu4g0653 4 10313837 10353090 ECH