Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0652 ATGAAGTTCTGCAAAAAATACCAGGAATACATGCAAGGCCAGGAGAAGAAGCTTCCAGGGGTTGGCTTCAAGAAGCTCAAGAAGATCCTGAAAAAGTGCAGGAGAGAGTGTCCATCCCAGAAAGCCCTTGATGCATCCCTTGTTGCCAAAAGCTGCCCCGACCATTGCCCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTTAGATGTAGAAGGGTGCTTTAATCAGCGTGCGCAGAAATTGCTGGAACTACATCTCGCTTCTGGCTTCAGAAAGTACTTTTTCTGGATCAAAGGCAAATTACAAGGGAACCATACTGCTCTGATTCAAGAAGGCAAAGACCTTGTTACTTATGCACTCATAAATGCCATTGCAATtcgaaaaattttaaagaaatacgaTAAGATTCATTATTCCAAGCAAGGGCAATTATTCAAGTCGCAGGTCCAGAGTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACCTGCTTTGTTCGATGGATGTTCTCTCACATTTAAGGATGGGAAACCGTCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACTTGTTCTATTTGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGGCATATATTCTGCTATATTTGTGCTTGCTCAGCTGCATCAGTATCTATTGTTAATGGACTTAAGGCTGCAGATCCTAAAGAGAAATGTCCTCTATGTCGTGAGGGTGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAACTAAATATTCTGCTAGGCCGAAGCTGTCAGGAATACTGGGAGCAGAGGCTTCGGACAGAGAGGGTGGAGAGGGTTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGTGTCTAA 975 0.4318 MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRECPSQKALDASLVAKSCPDHCPVCDGTFFPSLLNEMLDVEGCFNQRAQKLLELHLASGFRKYFFWIKGKLQGNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAPALFDGCSLTFKDGKPSLTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKAADPKEKCPLCREGAVYEGAVHLEELNILLGRSCQEYWEQRLRTERVERVKQIKEHWDSQCRAFVGV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0652 324 CDD SPX_BAH1-like 2 147 - -
Ssu4g0652 324 SMART ring_2 220 268 IPR001841 -
Ssu4g0652 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Ssu4g0652 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
Ssu4g0652 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Ssu4g0652 324 SUPERFAMILY RING/U-box 213 272 - -
Ssu4g0652 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Ssu4g0652 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 322 IPR013083 -
Ssu4g0652 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 - -
Ssu4g0652 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0652 Ssu-Chr4 10297744 10300419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0652 210 269 C3H Transcription Factor Family AT4G28270 38.806 4.38e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0652 K16275 - gmx:100787904 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0652 4 10297744 10300419 Ssu4g0652 4 10297744 10300419 ECH
Ssu7g2011 7 39921118 39923872 Ssu4g0652 4 10297744 10300419 PCT