Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0651 ATGGCGTCGAATGTGTCAGAGAAGCAAGTGATGGTGGTTGGAATCGACGACAGTAATTTCAGCACGTACGCTCTCGAATGGACTCTGGATCACTTGCTATCCCCTGCACTTAATCCTAACTTCAAGCTTGTTCTTGTTTATGCCATGCCTACTGTTTCCTCTACTGTCGGCTTTGTTGGCCCTGGAGCCGCTGAGGTGATACCTATTGTCGAAGCGGATTTGAAAAGAACAGCTGCCAAAATCACTGAACAAGCTCAAGAAATATGCAAGAAGAAATCTGTAAATGACGTAATGGTGGAAGTGTTGGAAGGTGATCCTAgaaatgttctttgtgatgctgTGGAGAAGCACCATGCTTCAATGTTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGTAGTGTAAGTGACTATTGTGCTCATCATGCTCACTGCACTGTCATGATCGTGAAGAAGCCAAAGCCCAAACACTGA 489 0.4356 MASNVSEKQVMVVGIDDSNFSTYALEWTLDHLLSPALNPNFKLVLVYAMPTVSSTVGFVGPGAAEVIPIVEADLKRTAAKITEQAQEICKKKSVNDVMVEVLEGDPRNVLCDAVEKHHASMLVVGSHGYGAIKRAVLGSVSDYCAHHAHCTVMIVKKPKPKH 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0651 162 PANTHER - 6 161 - -
Ssu4g0651 162 PANTHER UNIVERSAL STRESS PROTEIN A-LIKE PROTEIN 6 161 - -
Ssu4g0651 162 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 158 - -
Ssu4g0651 162 Gene3D HUPs 2 162 IPR014729 -
Ssu4g0651 162 PRINTS Universal stress protein signature 8 26 IPR006015 -
Ssu4g0651 162 PRINTS Universal stress protein signature 134 156 IPR006015 -
Ssu4g0651 162 PRINTS Universal stress protein signature 116 128 IPR006015 -
Ssu4g0651 162 Pfam Universal stress protein family 10 156 IPR006016 -
Ssu4g0651 162 CDD USP_Like 11 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0651 Ssu-Chr4 10272364 10275233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0651 21 157 Plant U-box Gene Family AT5G57035 29.677 1.34e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0651 - - gmx:100306046 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0651 4 10272364 10275233 Ssu4g0651 4 10272364 10275233 ECH