Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0649 atgagtaggCGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATAACACACATTGACCTAAAAGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCTCATGGTGGACGTGGTCATTCATCATCTAGAGATCGACATAGTAGTCACAGCAATGGTGGCCGTGCTGGACGTGGGGTATCTAGGCGCTCTGAATATCGTGTTTTAGTCACTGGATTACCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGTAAAGCAGGGGATGTTTGCTTTTCCCAAGTTTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGTGTGAGGCAATATGATTCAAGGCGAGATTCCTCTAGAAGTCCTAGTCATGGCCCATCTCATTCCAGAGGAAGAAGCTATAGCCGCAGTCGTAGCCGTAGCGGTAGTTACAGTCGTGGCCGGAGCCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCGTCTCGTTCACGCTCAAGATCAAGGTCCCGTTCATTATCAGGataTGGAAACTTGCAGCATACTGGAAATTGGAAATTAGGATCTTGGTGGGATTTGGTTCAATTGCCTGCaacccattttgttgtggagATTGGGAATCAAGGAGATCATGGATTGCCATTTTAG 906 0.4437 MSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVRQYDSRRDSSRSPSHGPSHSRGRSYSRSRSRSGSYSRGRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSRSLSGYGNLQHTGNWKLGSWWDLVQLPATHFVVEIGNQGDHGLPF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0649 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Ssu4g0649 301 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 254 - -
Ssu4g0649 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Ssu4g0649 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 176 IPR000504 GO:0003723
Ssu4g0649 301 SMART rrm1_1 8 78 IPR000504 GO:0003723
Ssu4g0649 301 SMART rrm1_1 113 186 IPR000504 GO:0003723
Ssu4g0649 301 MobiDBLite consensus disorder prediction 73 109 - -
Ssu4g0649 301 Gene3D - 2 111 IPR012677 -
Ssu4g0649 301 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 254 - -
Ssu4g0649 301 MobiDBLite consensus disorder prediction 200 264 - -
Ssu4g0649 301 CDD RRM2_SF2_plant_like 112 187 - -
Ssu4g0649 301 SUPERFAMILY RNA-binding domain, RBD 5 176 IPR035979 GO:0003676
Ssu4g0649 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Ssu4g0649 301 Gene3D - 112 189 IPR012677 -
Ssu4g0649 301 MobiDBLite consensus disorder prediction 73 98 - -
Ssu4g0649 301 MobiDBLite consensus disorder prediction 187 264 - -
Ssu4g0649 301 CDD RRM1_SF2_plant_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0649 Ssu-Chr4 10252648 10256012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0649 8 196 Eukaryotic Initiation Factors Gene Family AT4G34110 23.737 5.32e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0649 K12890 - gmx:100796900 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0649 4 10252648 10256012 Ssu4g0649 4 10252648 10256012 ECH