Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0639 ATGGGAATCGATTTGAAGGCAGGAGGTAAGTCCAAGAAGACCAAGCGCACCGCCCCCAAATCCGATGACATCTACTTGAAGCTCCTTGTCAAGCTGTACCGTTTTCTCGTTCGGAGGACTGAGAGTAATTTCAATGCCGTCGTCCTCAAGCGCCTTTTCATGAGCAAGGTCAACAAGCCTCCGCTGTCGCTCTCTAGATTGATCCGGTTCATGAAGGGAAAGGAGGATAAGATAGCTGTGGTTGTTGGCGCCGTGACCGACGACATTCGGGTGTACGAAGTCCCTGCGATGAAGGTAACTGCCCTGAGGTTCACTGAAACTGCCAGAGCTAGAATTGAGAAGGCTGGTGGGGAATGCCTTACCTTTGATCAACTGGCTCTTAGAGCCCCTCTCGGCCAGAACACGGTTCTTCTTAGAGGTCCTAAGAATGCCCGTGAGGCTGTCAAGCACTTTGGACCAGCTCCTGGTGTGCCCCATAGCCACACCAAGCCCTATGTCCGTTCAAAGGGACGAAAGTTTGAGCGGGCCAGAGGAAGAAGGAATAGCAAAGGCTTTAGAGTTTGA 564 0.5195 MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTESNFNAVVLKRLFMSKVNKPPLSLSRLIRFMKGKEDKIAVVVGAVTDDIRVYEVPAMKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSKGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0639 187 Gene3D - 1 187 - -
Ssu4g0639 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Ssu4g0639 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Ssu4g0639 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Ssu4g0639 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0639 Ssu-Chr4 10106547 10108224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0639 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.032 7.82e-106 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0639 K02883 - gmx:100306301 359.377