Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0637 ATGACTATGGACCCAGTCGTTGAATCCAAGTACGCCCACAACGGCAAGGTCATGGTGGGCACTGCCATTCTCCTCTTCATCATCATACTCATCATCATTCTCTTTCAAACCTACGTCCGCTTttgccgccgccgccgccgccgtcAATTTTCTCATTCGCTTCCGGCTAATTCCTCCGCCACCCCTTTCAGTGAGCCGTGTCTTGACCCCTCCGTTATCAAGTCCCTCCCCACTTTTACCTTCTCCGCCGCCAGCCACCGCTCGACTCAGGACTGCGCCGTGTGCTTGTCGGAGTTCGCCGACGGCGACGAAGGCCGCGTGCTCCCGAACTGTAACCACGCTTTCCACGCCCATTGCATCGACACGTGGTTCGCCTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCGGCCACGGGTTCCGCCGACACCGAACCGGGTTCGGATTCGGTCTCCGAACCGGGTGAGGCTTGCTCCTCCTCGTCGTTGCCTGCGCCGATTGGGTGTCCGAGAAAGCCGTTGGGTATAATCTTAGAGGTGCCAGAGGTGGAAAGAGGGTCGGATACCGTGACCGGCGATCAAGGATTCCGATGGTCGTTGAAGAGGTTTTGCAGCGTTTAA 627 0.555 MTMDPVVESKYAHNGKVMVGTAILLFIIILIIILFQTYVRFCRRRRRRQFSHSLPANSSATPFSEPCLDPSVIKSLPTFTFSAASHRSTQDCAVCLSEFADGDEGRVLPNCNHAFHAHCIDTWFASHSTCPLCRTPVQPATGSADTEPGSDSVSEPGEACSSSSLPAPIGCPRKPLGIILEVPEVERGSDTVTGDQGFRWSLKRFCSV 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0637 208 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Ssu4g0637 208 MobiDBLite consensus disorder prediction 140 161 - -
Ssu4g0637 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
Ssu4g0637 208 SMART ring_2 92 133 IPR001841 -
Ssu4g0637 208 MobiDBLite consensus disorder prediction 140 166 - -
Ssu4g0637 208 PANTHER RING-H2 FINGER PROTEIN ATL64 8 159 - -
Ssu4g0637 208 Pfam Ring finger domain 91 134 IPR001841 -
Ssu4g0637 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 159 - -
Ssu4g0637 208 CDD RING-H2_PA-TM-RING 91 134 - -
Ssu4g0637 208 SUPERFAMILY RING/U-box 72 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0637 Ssu-Chr4 10093872 10094498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0637 11 207 Rapid Response to Elicitors AT3G16720 36.250 2.37e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0637 - - gmx:100800433 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0637 4 10093872 10094498 Ssu4g0637 4 10093872 10094498 ECH