Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0636 ATGATAATTAAGCGGATTATGAAAACTGGAATGCAGAAGCGGAAACGGTGTAAGCCAGAAAACTGCGAGAATTCGGCGATTCAGAAGAAGCAGAGAGTAAATGGGCTTTATTCTGCTGAAGGTGTATCTGGATCCAGTGAAGTCCAGTCCAATTCAAATTCCGTGGACTCGAATGGCACAATTCGAGACTCGCCCCCACAATCAGAAGAAGCGATTCGACCCCGGTCTTCCAGAGGTCGCGTTCAGAAGCTTCCCTGCAGGTTCAATGATTCTGTTCTTTACGAACACTTCGGGTTTGAAGATGACAATGCTGCACATGACGCTgacaagagaaataaaagagctTCTCCTTGTTTTCCATATTCTGCTGAGTTCAGCGATTTTGACTATTCGGTTAAGACCGTTAAAACGACGGTTAATGGGAGCCGTTCCTTATTGGTTAAAGGAAAGAGTAATAATGCGTCTGGGCTTGGTTCCAATGTTGAGGGTGTGGATGGAAATGGTAAAAGGAAGAATGGCATTTACAGATTAGAGGATTTTTCTGTGGGTGATATAGTTTGGGCAAAATGTGGGAAGAGCTATCCTGCTTGGCCTGCTGTGGTGATTGATCCCATCTCGCAAGCTCCCAAATCCGTCTTAAGCCGCTGTGTTCCTGGTGCACTTTGCGTTATGTTTTTTGGTTATTCCAAAAATGGAAAGCAAAGgGACTATGCGTGGGTGAAGCAGGGGATGATATTTCCCTTCTTGGAATTCATGGACAGATTCCAGGGGCAGCCGCCCCGGTTGTACAAAAGTAAAGCAAGTGACTTTCAAATGGCATTAGAGGAGGCAATGCTAGCAGAAGATGGCATTTTGGACTCACACTTAGGAGCTGAGCAAATTATGGAGGGTGCGGATTCCTGTGTTGACCAGGATACAATATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGCTTCTCAGCACTATTGTAAGCCTTGTGCAAAGTtgctaaaatcaaaacaatattgTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGCGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTGAAGGATCTGGAAAATATGGATTACTATTGCCCAGATTGCAAGGGAAAAttcaattgtaaattatcaacaTCACAAACATACAAGTCAAAAATTATATCAATGGAAAATAGCCAAAAACCTGTATTACCTGAAAAGCTGGCGGTGGTATGCAATGACATGGAAGGAATCTATATTCCAAAGCTTCATTTGATTATGTGCAAGTGTGGCTTGTGTGGTTCAAGGAAGCAGACACTCACCGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAATATAGTGTGAAAGTAGAAAGCACAATGCAACCACTAATAAAATGGATTATTGAACACAATTCCCAAGCTGGAATTCCCCTGCAGTTAGATCAGCAACAAATGCTCTCCTTTTTGCACGAGAAGTATGTGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGATTGGgaagataacaaaattatcatCTGTAACAGGTGCCAAATTGCTGTCCACCAAGAATGCTATGGGGCAACGAATGTTAAGGACTTTACTTCCTGGGTTTGTAGAGTCTGTGAAACTCCTGATGTTGAGAGGGAGTGTTGCCTCTGTCCAGTAAAAGGTGGGGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCTTCTGGAATCCTAAAGATTCCTCCTAATTCCTTTTTGAAGACTTGCATGATTTGTAAACAAAGCCACGGTTCCTGTACAAGCTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGCGCGTCAAGAATGGGATATAGCATGGAATTGCATTCGACAGAAAAGAATGGGACTCAAAAAACGAAGACGCTAATATATTGTGCAATTCACAGgGTCCCAAACCCGGATTCAGTATTGATTGTACATACACCCATGGGGGTATTCTCACCGAGAACTTCGCTTCAAAATCACCCGGGGTGCTTCAGGGGATCAAGACTGGTTTCATCAAAGAATGTAGAACTCCTTGAACCTTCAAAAACTGAAAGTTATGAGATTGAGCCTCTGTCTGCTGCCAGGTGTCGTGTGTACAAAAGGTCTTTCAATAAGAAGGATGATGTGCCAATAATTCACTTGCTTGGGGGGCCAAACCTTCATTCTTTGAGTGCAATAACTCAATTGAACAGCAGTAAGGATGCTCAagtattttcttctcttaaggAACGTCTTCACCATTTATGGAAAACAGAAAACCAAAGAGTTTGCTTAGGGAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAAATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGGCGTAGTATTGCTGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATTAGTGAGGAAGTGGTAATTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGTTTGGGTGATCAGGAAAGCCGGATTGTTCTTATTGCCAAGATTAATGTTTCAGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGAGATGAACTGAAGGTTCTCTGTCTCTGTAAAGCCCCTGATTGTAGGAAATTTATGAACTAG 2883 0.4152 MIIKRIMKTGMQKRKRCKPENCENSAIQKKQRVNGLYSAEGVSGSSEVQSNSNSVDSNGTIRDSPPQSEEAIRPRSSRGRVQKLPCRFNDSVLYEHFGFEDDNAAHDADKRNKRASPCFPYSAEFSDFDYSVKTVKTTVNGSRSLLVKGKSNNASGLGSNVEGVDGNGKRKNGIYRLEDFSVGDIVWAKCGKSYPAWPAVVIDPISQAPKSVLSRCVPGALCVMFFGYSKNGKQRDYAWVKQGMIFPFLEFMDRFQGQPPRLYKSKASDFQMALEEAMLAEDGILDSHLGAEQIMEGADSCVDQDTISCAGCGLMLPCKTMKKIKDSSCASQHYCKPCAKLLKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLLKDLENMDYYCPDCKGKFNCKLSTSQTYKSKIISMENSQKPVLPEKLAVVCNDMEGIYIPKLHLIMCKCGLCGSRKQTLTEWERHAGCKAKKWKYSVKVESTMQPLIKWIIEHNSQAGIPLQLDQQQMLSFLHEKYVPVYAKWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGATNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPASGILKIPPNSFLKTCMICKQSHGSCTSCCKCATYFHVMCASRMGYSMELHSTEKNGTQKTKTLIYCAIHRVPNPDSVLIVHTPMGVFSPRTSLQNHPGCFRGSRLVSSKNVELLEPSKTESYEIEPLSAARCRVYKRSFNKKDDVPIIHLLGGPNLHSLSAITQLNSSKDAQVFSSLKERLHHLWKTENQRVCLGKSGIHGWGLFARRNLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKINVSAGEELTYDYLFDPDERDELKVLCLCKAPDCRKFMN 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0636 960 Gene3D SET domain 790 960 IPR046341 -
Ssu4g0636 960 SMART PHD_3 642 698 IPR001965 -
Ssu4g0636 960 SMART PHD_3 531 578 IPR001965 -
Ssu4g0636 960 SMART PHD_3 347 399 IPR001965 -
Ssu4g0636 960 Pfam SET domain 829 934 IPR001214 GO:0005515
Ssu4g0636 960 ProSitePatterns Zinc finger PHD-type signature. 532 577 IPR019786 -
Ssu4g0636 960 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 960 IPR025780 -
Ssu4g0636 960 MobiDBLite consensus disorder prediction 40 79 - -
Ssu4g0636 960 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 960 - -
Ssu4g0636 960 ProSiteProfiles Zinc finger PHD-type profile. 345 401 IPR019787 -
Ssu4g0636 960 Pfam PWWP domain 183 280 IPR000313 -
Ssu4g0636 960 SUPERFAMILY FYVE/PHD zinc finger 345 406 IPR011011 -
Ssu4g0636 960 Pfam PHD-finger 347 400 IPR019787 -
Ssu4g0636 960 CDD SET_SETD1-like 807 956 - -
Ssu4g0636 960 ProSiteProfiles Post-SET domain profile. 944 960 IPR003616 -
Ssu4g0636 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 526 580 IPR013083 -
Ssu4g0636 960 SUPERFAMILY Tudor/PWWP/MBT 178 282 - -
Ssu4g0636 960 Pfam PHD-finger 544 578 - -
Ssu4g0636 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 404 IPR013083 -
Ssu4g0636 960 ProSiteProfiles Extended PHD (ePHD) domain profile. 583 698 IPR034732 -
Ssu4g0636 960 SMART set_7 818 941 IPR001214 GO:0005515
Ssu4g0636 960 ProSiteProfiles SET domain profile. 818 935 IPR001214 GO:0005515
Ssu4g0636 960 PANTHER PHD FINGER PROTEINS 1 960 - -
Ssu4g0636 960 ProSiteProfiles PWWP domain profile. 182 251 IPR000313 -
Ssu4g0636 960 SMART PWWP_4 180 249 IPR000313 -
Ssu4g0636 960 SUPERFAMILY SET domain 814 957 IPR046341 -
Ssu4g0636 960 Gene3D - 176 283 - -
Ssu4g0636 960 CDD PHD_ATX3_4_5_like 531 577 IPR042011 -
Ssu4g0636 960 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 581 699 IPR013083 -
Ssu4g0636 960 Pfam PHD-zinc-finger like domain 585 697 - -
Ssu4g0636 960 ProSiteProfiles Zinc finger PHD-type profile. 529 580 IPR019787 -
Ssu4g0636 960 SUPERFAMILY FYVE/PHD zinc finger 530 594 IPR011011 -
Ssu4g0636 960 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0636 Ssu-Chr4 10076198 10084540 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0636 532 684 C2H2 Transcription Factor Family AT3G14740 34.568 4.97e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu4g0636 zf-HC5HC2H_2 6.7e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0636 - - gmx:100785063 1546.18