Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0635 atgggaggCATTACAAAACTCTTCTCGGCGTTGGTTCTCTGCGTGATTGTGATGGCACACCAGACAGCCGCTGAGGAAACAAAAGGAAAGGACCTAATCAACAAGGTATGCACAGTCTCCCCAAGCAGGGACCTCTGCATGGAAGTCCTATCATCAGACCCAGTCAGAAGCCCAACCGCAAGCCTCAGAGACTTGGCAATCATCTCCCTTAGGGTGGCTGCCAACAACGCCTCTGGCATCCTCAGCGACACGAAAACGCTGATCGATGACGCCGACTTGAGCCCCGACCTTCAACAGGGGTTGTCTGATTGCAAGGAAACAATCTTGGACGCAGAGAGCCAGCTTGAGGACACCATTGCCTCCTTGTTGGCAGGCTCCGACGCTGACGCACAGCTTTGGCTCAAGGCTGCCTTGGCCGCAATCGACACCTGCGACGCCTCCATCCCAGGAGACGACGACATTCTCTCCGTTAAGAGTGCCGTCTTCCGCAAGCTCTGCAACATTTCCATCGCCGTCAGCAAGCTCTTGGACAAACCCATGAAACTCTAA 549 0.5373 MGGITKLFSALVLCVIVMAHQTAAEETKGKDLINKVCTVSPSRDLCMEVLSSDPVRSPTASLRDLAIISLRVAANNASGILSDTKTLIDDADLSPDLQQGLSDCKETILDAESQLEDTIASLLAGSDADAQLWLKAALAAIDTCDASIPGDDDILSVKSAVFRKLCNISIAVSKLLDKPMKL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0635 182 Pfam Plant invertase/pectin methylesterase inhibitor 31 171 IPR006501 GO:0004857
Ssu4g0635 182 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
Ssu4g0635 182 SMART PMEI_2 28 172 IPR006501 GO:0004857
Ssu4g0635 182 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Ssu4g0635 182 PANTHER PECTINESTERASE 4 177 - -
Ssu4g0635 182 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 4 177 - -
Ssu4g0635 182 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0635 Ssu-Chr4 10073916 10074464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0635 28 176 Carbohydrate Esterase AT3G49220 27.152 1.81e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0635 - - gmx:102667060 283.493