Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0634 ATGGCTTCCAACCTTTGTTCCCCCCACTCCATTTTTCTCATTCTCCTACCCTTATTTGCCTCAATAGCAGCTTCCACTGACACCGTTGCAAATCCCACCACTCCTGTCTCCCCCGGAACCGCATGCAAATCCACCCCAGACCCATCCTATTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTATGGCCGGTTCTCCATCAAAAAGTCACTATCACAGGCTCGCCAGTTCTTGAGCCTAGTTGACAAATATCTCCAACGTCGCTCTTCTCTCTCCTCCACCGCAATCCGCGCTCTTCAAGATTGCCGCACTCTTGGAGAACTAAACTTGGATTTCCTTTCTAGTTCCTTCCAAACCGTGAACAAGACAACGAGGTTTCTTCCTAGTTTTCAAGCTGACGACATCCAAACCTTACTCAGCGCCATTCTGACCAACCAGCAAACATGCTTGGACGGCCTCAAAGACACGGCCTCGGCTTGGAGCGTGAGAAACGGTCTCACCGTCCCACTTTCCAACGACACCAAACTCTACAGTGTCTCTCTCGCTCTCTTCACAAAGGGTTGGGTTCCCAGCGGCAAAACCAAAGGCAAGGCAATGCACCCAACCAGGAAACAACTTGGGTTCCGAAACGGGCGTTTGCCTCTTAAGATGTCGGGCAGAACCCGCGCGATCTACGAGTCCGTGAGTAGGAGGAAGCTCCTTCAGACCCCGGTGGGTAACGAGGTGGTGGTGAGGGATATTGTGACGGTGAGCCAAGATGGAAGTGGCAACTTCACCACCATCAATGATGCCCTTGCCGCAGCTCCTAACAAATCTTCCTCTACCGACGGGTACTTCCTTATCTATGTCACTGCCGGTGTGTACGAGGAAAATGTGTCCGTTGATAAGAAGAAGACGTACTTGATGATGGTCGGGGATGGTATCAACAAGACAATTATCACAGGCAATCGCAGCGTCGTCGATGGCTGGACAACCTTCAGCTCCGCAACATttgCTGTGGTTGGGGAAGGATTCGTGGGTGTGAACATAACCTTCCGCAACACCGCCGGGGCCGTGAAGCATCAAGCAGTGGCAGTTCGAAACGGAGCGGATTTGTCCGCGTTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACACTATACGTACATTCCCTGAGACAATTCTACAGGGAATGCGACATCTACGGCACGGTAGATTTCATCTTCGGAAACGCTAAGGTCGTGTTCCAAAGTTGCAACATGTATCCTCGTCTCCCCATGAGTGGTCAATTCAACGCCATAACAGCACAAGGCAGAACAGACCCGAACCAAGACACGGGTATTTCTATCCACAACTGTACCATTAGAGCAGCTGATGATTTAGCTGCTAGCAACGGTGCGGCTGCAACGTATTTGGGAAGGCCATGGAAGGAGTATTCGAGAACGGTTTATATGCAAACTTTTGTGGACAATGTGATCGATGCCGCGGGGTGGCGTGAGTGGGACGGTAATTTTGCATTAAGCACTTTGTATTATGCAGAGTTCAGCAACAGTGGGCCAGGGTCCAGCACCGCCAATAGAGTGACGTGGCCTGGTTATCATGTGATTAATGCCACGGATGCAGCCAACTTTACGGTGTCTAATTTCTTGCTTGGAGATGACTGGTTACCCCAGACAGGAGTGACTTACACagataacttgatatag 1695 0.5038 MASNLCSPHSIFLILLPLFASIAASTDTVANPTTPVSPGTACKSTPDPSYCKSVLPPQNGNVYDYGRFSIKKSLSQARQFLSLVDKYLQRRSSLSSTAIRALQDCRTLGELNLDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLTVPLSNDTKLYSVSLALFTKGWVPSGKTKGKAMHPTRKQLGFRNGRLPLKMSGRTRAIYESVSRRKLLQTPVGNEVVVRDIVTVSQDGSGNFTTINDALAAAPNKSSSTDGYFLIYVTAGVYEENVSVDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATFAVVGEGFVGVNITFRNTAGAVKHQAVAVRNGADLSAFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVFQSCNMYPRLPMSGQFNAITAQGRTDPNQDTGISIHNCTIRAADDLAASNGAAATYLGRPWKEYSRTVYMQTFVDNVIDAAGWREWDGNFALSTLYYAEFSNSGPGSSTANRVTWPGYHVINATDAANFTVSNFLLGDDWLPQTGVTYTDNLI 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0634 564 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Ssu4g0634 564 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 24 562 - -
Ssu4g0634 564 SUPERFAMILY Pectin lyase-like 247 560 IPR011050 -
Ssu4g0634 564 PANTHER PECTINESTERASE 24 562 - -
Ssu4g0634 564 SMART PMEI_2 33 186 IPR006501 GO:0004857
Ssu4g0634 564 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Ssu4g0634 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Ssu4g0634 564 Gene3D - 245 563 IPR012334 -
Ssu4g0634 564 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 188 IPR006501 GO:0004857
Ssu4g0634 564 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Ssu4g0634 564 CDD PMEI-like_3 40 191 - -
Ssu4g0634 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0634 Ssu-Chr4 10048429 10050632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0634 10 564 Carbohydrate Esterase AT4G02330 63.684 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0634 K01051 - gmx:100800971 1014.6