Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0633 ATGTCCATACAAAATGCGACCATAAAAGCAGTACAAGATTTGGCTCCCATGGTTGGTATTGTGGAAACATATCTTGGGAGACCATGGAAAGAGTACTTGAGGACTATTTATATGCAGTCTATTATGGATATTTTGACAGCTTTTGCTGGTTGGCATGAATGGAGTGGGAATTTTTCACTCACCACCTTATACTACGCAGAGTATGATAACATGGGTCCTACTTCAAATACTGCCAACCGAGTGAACTAG 249 0.4056 MSIQNATIKAVQDLAPMVGIVETYLGRPWKEYLRTIYMQSIMDILTAFAGWHEWSGNFSLTTLYYAEYDNMGPTSNTANRVN 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0633 82 SUPERFAMILY Pectin lyase-like 2 81 IPR011050 -
Ssu4g0633 82 Gene3D - 1 82 IPR012334 -
Ssu4g0633 82 PANTHER PECTINESTERASE 2 82 - -
Ssu4g0633 82 PANTHER PECTINESTERASE 2 82 - -
Ssu4g0633 82 Pfam Pectinesterase 1 82 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0633 Ssu-Chr4 10020903 10021151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0633 2 81 Carbohydrate Esterase AT1G02810 62.500 7.97e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0633 K01051 - gmx:100792847 140.584